Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4203 and Dshi_4204 are separated by 66 nucleotides Dshi_4204 and Dshi_4205 overlap by 4 nucleotides Dshi_4205 and Dshi_4206 are separated by 61 nucleotides
Dshi_4203: Dshi_4203 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 50,499 to 51,551
_4203
Dshi_4204: Dshi_4204 - hypothetical protein (RefSeq), at 51,618 to 52,199
_4204
Dshi_4205: Dshi_4205 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 52,196 to 53,524
_4205
Dshi_4206: Dshi_4206 - aminotransferase class IV (RefSeq), at 53,586 to 54,509
_4206
Position (kb) 52
53
54 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 51.196 kb on - strand, within Dshi_4203 at 51.372 kb on - strand, within Dshi_4203 at 51.374 kb on + strand, within Dshi_4203 at 51.414 kb on + strand, within Dshi_4203 at 52.064 kb on - strand, within Dshi_4204 at 52.299 kb on + strand at 52.349 kb on - strand, within Dshi_4205 at 52.414 kb on - strand, within Dshi_4205 at 52.425 kb on - strand, within Dshi_4205 at 52.573 kb on - strand, within Dshi_4205 at 52.682 kb on - strand, within Dshi_4205 at 53.315 kb on + strand, within Dshi_4205 at 53.350 kb on - strand, within Dshi_4205 at 53.354 kb on - strand, within Dshi_4205 at 53.398 kb on - strand at 53.578 kb on + strand at 53.812 kb on + strand, within Dshi_4206 at 53.964 kb on + strand, within Dshi_4206 at 54.168 kb on + strand, within Dshi_4206 at 54.271 kb on + strand, within Dshi_4206
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 51,196 - Dshi_4203 0.66 -0.2 51,372 - Dshi_4203 0.83 -0.2 51,374 + Dshi_4203 0.83 -0.2 51,414 + Dshi_4203 0.87 -0.2 52,064 - Dshi_4204 0.77 +0.8 52,299 + +1.7 52,349 - Dshi_4205 0.12 -0.6 52,414 - Dshi_4205 0.16 -4.0 52,425 - Dshi_4205 0.17 -2.5 52,573 - Dshi_4205 0.28 -0.0 52,682 - Dshi_4205 0.37 +0.1 53,315 + Dshi_4205 0.84 -2.2 53,350 - Dshi_4205 0.87 -2.0 53,354 - Dshi_4205 0.87 -1.2 53,398 - +1.4 53,578 + -0.2 53,812 + Dshi_4206 0.24 -2.5 53,964 + Dshi_4206 0.41 +1.4 54,168 + Dshi_4206 0.63 -0.4 54,271 + Dshi_4206 0.74 +0.2
Or see this region's nucleotide sequence