Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4189 and Dshi_4190 are separated by 163 nucleotides Dshi_4190 and Dshi_4191 are separated by 78 nucleotides
Dshi_4189: Dshi_4189 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq), at 34,761 to 35,777
_4189
Dshi_4190: Dshi_4190 - hypothetical protein (RefSeq), at 35,941 to 37,218
_4190
Dshi_4191: Dshi_4191 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 37,297 to 38,292
_4191
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 34.975 kb on - strand, within Dshi_4189 at 35.378 kb on - strand, within Dshi_4189 at 35.397 kb on - strand, within Dshi_4189 at 35.631 kb on + strand, within Dshi_4189 at 35.743 kb on - strand at 35.845 kb on + strand at 35.893 kb on + strand at 36.013 kb on - strand at 36.378 kb on - strand, within Dshi_4190 at 37.013 kb on - strand, within Dshi_4190 at 37.115 kb on - strand at 37.157 kb on - strand at 37.218 kb on + strand at 37.574 kb on + strand, within Dshi_4191 at 37.676 kb on + strand, within Dshi_4191 at 37.782 kb on - strand, within Dshi_4191 at 37.898 kb on + strand, within Dshi_4191 at 38.008 kb on + strand, within Dshi_4191 at 38.041 kb on - strand, within Dshi_4191 at 38.059 kb on - strand, within Dshi_4191 at 38.066 kb on + strand, within Dshi_4191
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 34,975 - Dshi_4189 0.21 -0.8 35,378 - Dshi_4189 0.61 -2.8 35,397 - Dshi_4189 0.63 -1.5 35,631 + Dshi_4189 0.86 -0.2 35,743 - -0.2 35,845 + -0.2 35,893 + +2.4 36,013 - +2.4 36,378 - Dshi_4190 0.34 +0.4 37,013 - Dshi_4190 0.84 -2.2 37,115 - -0.2 37,157 - -3.0 37,218 + -2.5 37,574 + Dshi_4191 0.28 -0.6 37,676 + Dshi_4191 0.38 +2.9 37,782 - Dshi_4191 0.49 +1.2 37,898 + Dshi_4191 0.60 +3.4 38,008 + Dshi_4191 0.71 +2.6 38,041 - Dshi_4191 0.75 -0.2 38,059 - Dshi_4191 0.77 -3.8 38,066 + Dshi_4191 0.77 +0.9
Or see this region's nucleotide sequence