Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4163 and Dshi_4164 overlap by 4 nucleotides Dshi_4164 and Dshi_4165 overlap by 11 nucleotides Dshi_4165 and Dshi_4166 are separated by 96 nucleotides
Dshi_4163: Dshi_4163 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 10,765 to 12,342
_4163
Dshi_4164: Dshi_4164 - ABC transporter related (RefSeq), at 12,339 to 13,145
_4164
Dshi_4165: Dshi_4165 - NMT1/THI5 like domain protein (RefSeq), at 13,135 to 14,130
_4165
Dshi_4166: Dshi_4166 - hypothetical protein (RefSeq), at 14,227 to 15,177
_4166
Position (kb) 13
14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 12.399 kb on - strand at 12.488 kb on + strand, within Dshi_4164 at 12.536 kb on - strand, within Dshi_4164 at 12.845 kb on + strand, within Dshi_4164 at 12.955 kb on - strand, within Dshi_4164 at 13.142 kb on + strand at 13.142 kb on + strand at 13.150 kb on - strand at 13.272 kb on + strand, within Dshi_4165 at 13.272 kb on + strand, within Dshi_4165 at 13.525 kb on + strand, within Dshi_4165 at 13.611 kb on + strand, within Dshi_4165 at 13.619 kb on - strand, within Dshi_4165 at 13.658 kb on - strand, within Dshi_4165 at 13.659 kb on + strand, within Dshi_4165 at 13.701 kb on + strand, within Dshi_4165 at 13.916 kb on + strand, within Dshi_4165 at 14.188 kb on - strand at 14.316 kb on - strand at 14.524 kb on + strand, within Dshi_4166 at 14.744 kb on + strand, within Dshi_4166 at 14.907 kb on - strand, within Dshi_4166
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 12,399 - -1.8 12,488 + Dshi_4164 0.18 -1.8 12,536 - Dshi_4164 0.24 +0.8 12,845 + Dshi_4164 0.63 +0.1 12,955 - Dshi_4164 0.76 +0.6 13,142 + +2.4 13,142 + +1.8 13,150 - -0.6 13,272 + Dshi_4165 0.14 +0.3 13,272 + Dshi_4165 0.14 -2.2 13,525 + Dshi_4165 0.39 -0.8 13,611 + Dshi_4165 0.48 -0.6 13,619 - Dshi_4165 0.49 -1.8 13,658 - Dshi_4165 0.53 +0.8 13,659 + Dshi_4165 0.53 -4.0 13,701 + Dshi_4165 0.57 -0.4 13,916 + Dshi_4165 0.78 -0.2 14,188 - +0.9 14,316 - -3.7 14,524 + Dshi_4166 0.31 +1.1 14,744 + Dshi_4166 0.54 +3.2 14,907 - Dshi_4166 0.72 +2.1
Or see this region's nucleotide sequence