Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4164

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4163 and Dshi_4164 overlap by 4 nucleotidesDshi_4164 and Dshi_4165 overlap by 11 nucleotides Dshi_4163: Dshi_4163 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 10,765 to 12,342 _4163 Dshi_4164: Dshi_4164 - ABC transporter related (RefSeq), at 12,339 to 13,145 _4164 Dshi_4165: Dshi_4165 - NMT1/THI5 like domain protein (RefSeq), at 13,135 to 14,130 _4165 Position (kb) 12 13 14Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 11.383 kb on + strand, within Dshi_4163at 11.663 kb on - strand, within Dshi_4163at 11.731 kb on - strand, within Dshi_4163at 11.771 kb on - strand, within Dshi_4163at 11.883 kb on - strand, within Dshi_4163at 11.898 kb on - strand, within Dshi_4163at 12.399 kb on - strandat 12.488 kb on + strand, within Dshi_4164at 12.536 kb on - strand, within Dshi_4164at 12.845 kb on + strand, within Dshi_4164at 12.955 kb on - strand, within Dshi_4164at 13.142 kb on + strandat 13.142 kb on + strandat 13.150 kb on - strandat 13.272 kb on + strand, within Dshi_4165at 13.272 kb on + strand, within Dshi_4165at 13.525 kb on + strand, within Dshi_4165at 13.611 kb on + strand, within Dshi_4165at 13.619 kb on - strand, within Dshi_4165at 13.658 kb on - strand, within Dshi_4165at 13.659 kb on + strand, within Dshi_4165at 13.701 kb on + strand, within Dshi_4165at 13.916 kb on + strand, within Dshi_4165

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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11,383 + Dshi_4163 0.39 +0.8
11,663 - Dshi_4163 0.57 +1.4
11,731 - Dshi_4163 0.61 -0.2
11,771 - Dshi_4163 0.64 +3.7
11,883 - Dshi_4163 0.71 +1.4
11,898 - Dshi_4163 0.72 +2.9
12,399 - -1.8
12,488 + Dshi_4164 0.18 -1.8
12,536 - Dshi_4164 0.24 +0.8
12,845 + Dshi_4164 0.63 +0.1
12,955 - Dshi_4164 0.76 +0.6
13,142 + +2.4
13,142 + +1.8
13,150 - -0.6
13,272 + Dshi_4165 0.14 +0.3
13,272 + Dshi_4165 0.14 -2.2
13,525 + Dshi_4165 0.39 -0.8
13,611 + Dshi_4165 0.48 -0.6
13,619 - Dshi_4165 0.49 -1.8
13,658 - Dshi_4165 0.53 +0.8
13,659 + Dshi_4165 0.53 -4.0
13,701 + Dshi_4165 0.57 -0.4
13,916 + Dshi_4165 0.78 -0.2

Or see this region's nucleotide sequence