Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4074

Experiment: Anaero. nitrate (e.a.), marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. nitrate (e.a.), marine broth
6,497	-				-0.4
6,504	+				+1.5
6,504	+				+0.3
6,504	+				+1.5
6,504	+				+2.3
6,505	+				-1.3
6,512	-				+0.9
6,519	+				-0.7
6,522	-				-0.3
6,522	-				-0.9
6,525	+				+1.9
6,542	-				+0.7
6,550	-				-1.3
6,581	+				-0.5
6,581	+				-0.5
6,581	+				+1.4
6,581	+				-0.1
6,581	+				+2.8
6,589	-				+0.5
6,589	-				-0.3
6,595	+				+0.6
6,600	+				+2.5
6,603	-				+0.1
6,621	+				+0.7
6,622	+				+0.3
6,629	-				+1.6
6,639	-				-0.6
6,663	+				-0.4
6,671	-				+1.1
6,673	+				-1.0
6,691	-				+0.3
6,705	+				+0.8
6,705	+				+3.1
6,705	+				+0.1
6,705	+				-2.3
6,705	+				-1.3
6,705	+				-1.1
6,713	-				+4.2
6,713	-				+1.8
6,713	-				+0.2
6,713	-				+0.2
6,713	-				+0.9
6,715	+				-0.0
6,748	-				+2.6
6,748	-				-1.7
6,748	-				+2.3
6,755	+				+0.3
6,755	+				-0.7
6,759	+				-0.6
6,759	+				-1.7
6,759	+				+3.6
6,759	+				+1.9
6,759	+				-0.3
6,760	+				+0.9
6,763	-				-1.3
6,763	-				-0.8
6,763	-				+0.7
6,763	-				+2.2
6,767	-				+0.6
6,767	-				+1.3
6,767	-				+0.5
6,767	-				+0.3
6,768	-				+4.4
6,771	+				+2.3
6,771	+				-2.0
6,771	+				-0.0
6,771	+				+0.7
6,771	+				-0.5
6,771	+				-3.1
6,771	+				-3.1
6,771	+				-0.0
6,771	+				+0.0
6,771	+				+0.5
6,771	+				+1.9
6,771	+				+0.1
6,771	+				-0.8
6,772	-				-0.3
6,772	-				-1.1
6,779	-				+0.3
6,779	-				-0.7
6,779	-				-0.3
6,779	-				+0.7
6,779	-				+1.5
6,779	-				+1.9
6,796	+				+0.8
6,804	-				+0.9
6,806	+				-0.3
6,809	+				+0.9
6,809	+				-1.3
6,809	+				+1.0
6,811	+				+0.9
6,817	-				+1.0
6,817	-				+0.3
6,817	-				-0.7
6,819	+				-1.0
6,819	+				-3.0
6,827	-				-0.7
6,827	-				+2.6
6,827	-				+0.8
6,831	+				+2.6
6,852	-				-0.1
6,854	+				+1.0
6,856	+				-1.6
6,856	+				+3.7
6,862	-				+0.6
6,864	-				-3.8
6,864	-				-0.1
6,864	-				-2.1
6,864	-				-0.6
6,864	-				+3.3
6,864	-				-1.3
6,864	-				-0.8
6,864	-				-0.1
6,864	-				-2.6
6,881	+				-0.7
6,905	-				-1.6
6,924	-				+0.3
6,927	+				+2.3
6,971	-				+0.2
6,973	-				+0.8
6,983	+				+0.3
6,988	+				+2.9
6,991	-				-1.8
7,004	+				+1.6
7,004	+				-0.3
7,009	+				-0.7
7,009	+				-1.0
7,009	+				-1.9
7,009	+				-0.4
7,009	+				-0.3
7,009	+				+1.9
7,009	+				-0.3
7,017	-				-3.4
7,017	-				-2.2
7,017	-				+1.4
7,017	-				-0.7
7,056	+				-1.5
7,060	+				-0.6
7,062	-				-0.2
7,062	-				+0.5
7,064	-				+1.9
7,068	-				+1.6
7,068	-				+0.1
7,080	+				+1.1
7,088	-				+1.0
7,102	-				-1.0
7,104	+				+1.3
7,104	+				+0.7
7,104	+				-2.2
7,105	+				+1.8
7,111	-				+2.3
7,112	-				-1.9
7,112	-				-0.7
7,112	-				-3.8
7,112	-				+0.0
7,112	-				+2.6
7,112	-				+0.5
7,112	-				+2.9
7,112	-				-0.6
7,112	-				-0.9
7,113	-				+0.4
7,117	-				-1.5
7,117	-				+1.9
7,117	-				+2.3
7,120	+				-2.7
7,120	+				-0.4
7,128	+				+1.8
7,128	+				-0.1
7,149	-				-1.7
7,176	+				-0.5
7,179	-				+0.7
7,184	-				+0.3
7,184	-				+0.7
7,194	-				+0.3
7,203	+				-1.3
7,211	-				+1.4
7,211	-				-1.1
7,211	-				-0.8
7,254	-				-2.8
7,270	+				+2.2
7,278	-				-1.9
7,278	-				-3.6
7,307	+				+3.1
7,307	+				+0.5
7,307	+				+4.3
7,308	+				-1.3
7,315	-				+0.7
7,315	-				+0.2
7,316	-				-2.0
7,321	-				-3.0
7,329	+				+4.4
7,329	+				-3.0
7,337	-				+0.4
7,381	+				-0.7
7,432	+				+2.6
7,434	+				+0.9
7,434	+				+0.2
7,446	+				+0.1
7,446	+				-3.3
7,450	-				-0.3
7,454	-				-0.3
7,462	+				-0.8
7,462	+				+1.3
7,470	-				-1.1
7,481	-				+0.7
7,485	-				-0.7
7,486	-				-2.0
7,492	-				-2.3
7,492	-				+0.3
7,511	+				-1.3
7,511	+				+1.3
7,537	+		Dshi_4074	0.16	-1.1
7,543	+		Dshi_4074	0.19	+0.8
7,555	-		Dshi_4074	0.23	+0.6
7,582	+		Dshi_4074	0.33	-0.7
7,590	-		Dshi_4074	0.36	-0.6
7,590	-		Dshi_4074	0.36	-0.4
7,590	-		Dshi_4074	0.36	-0.4
7,597	+		Dshi_4074	0.38	+0.3
7,604	-		Dshi_4074	0.41	+0.4
7,609	-		Dshi_4074	0.43	-1.3
7,622	+		Dshi_4074	0.48	+1.1
7,622	+		Dshi_4074	0.48	-1.0
7,622	+		Dshi_4074	0.48	-0.3
7,630	-		Dshi_4074	0.51	-0.1
7,630	-		Dshi_4074	0.51	-0.1
7,633	+		Dshi_4074	0.52	-0.8
7,640	+		Dshi_4074	0.54	+0.1
7,650	+		Dshi_4074	0.58	-1.8
7,660	+		Dshi_4074	0.62	-0.6
7,665	+		Dshi_4074	0.63	+1.3
7,665	+		Dshi_4074	0.63	+1.0
7,673	-		Dshi_4074	0.66	-0.8
7,673	-		Dshi_4074	0.66	+0.7
7,673	-		Dshi_4074	0.66	+3.1
7,673	-		Dshi_4074	0.66	-0.7
7,673	-		Dshi_4074	0.66	-1.3
7,683	-		Dshi_4074	0.70	-2.5
7,694	+		Dshi_4074	0.74	+2.2
7,694	+		Dshi_4074	0.74	-0.7
7,694	+		Dshi_4074	0.74	+0.2
7,694	+		Dshi_4074	0.74	+0.7
7,699	+		Dshi_4074	0.76	-3.0
7,707	-		Dshi_4074	0.79	+2.3
7,707	-		Dshi_4074	0.79	-2.3
7,714	-		Dshi_4074	0.81	-0.6
7,714	-		Dshi_4074	0.81	-0.1
7,715	-		Dshi_4074	0.82	-0.3
7,716	+		Dshi_4074	0.82	-0.2
7,722	+		Dshi_4074	0.84	-2.3
7,722	-		Dshi_4074	0.84	+0.3
7,730	+		Dshi_4074	0.87	-0.7
7,747	+				-0.0
7,753	-				+0.9
7,753	-				+2.5
7,761	+				-0.0
7,771	-				+0.3
7,785	+				+1.3
7,785	+				+0.6
7,791	-				-0.4
7,791	-				+0.9
7,793	-				-0.7
7,793	-				-0.4
7,805	-				-0.2
7,807	+				-3.1
7,808	+				-0.1
7,819	+				-0.8
7,819	+				+0.3
7,819	+				-0.6
7,819	+				-0.4
7,819	+				-1.8
7,819	+				-0.4
7,819	+				+0.6
7,819	+				+1.1
7,826	+				-0.8
7,827	-				-0.1
7,827	-				+4.3
7,827	-				-0.1
7,827	-				+1.0
7,827	-				+0.6
7,827	-				-1.4
7,827	-				+0.2
7,827	-				-0.8
7,827	-				+0.1
7,827	-				+1.2
7,836	+				-2.8
7,836	+				-0.6
7,844	-				-0.1
7,844	-				-1.5
7,844	-				+1.9
7,846	+				+0.7
7,849	+				+3.3
7,850	+				-1.7
7,858	-				+2.0
7,872	-				+2.6
7,875	-				-0.7
7,875	-				+0.5
7,902	+				-2.8
7,908	-				+0.3
7,908	-				-1.5
7,908	-				-2.3
7,910	-				-1.1
7,910	-				+1.2
7,910	-				-0.2
7,910	-				-1.7
7,915	+				-0.6
7,915	+				-3.8
7,915	+				+0.2
7,915	+				+0.2
7,915	+				-0.5
7,918	-				+0.9
7,921	+				-0.2
7,923	-				-1.7
7,923	-				+0.7
7,923	-				-0.3
7,923	-				+0.9
7,923	-				+1.2
7,923	-				-0.8
7,923	-				-2.0
7,923	-				+1.4
7,923	-				-1.6
7,923	-				+1.3
7,923	-				+1.1
7,923	-				+2.9
7,923	-				-0.2
7,923	-				+1.2
7,923	-				+2.2
7,923	-				+1.1
7,923	-				+0.3
7,923	-				+0.0
7,923	-				-0.1
7,923	-				+1.2
7,924	-				-0.9
7,926	+				+1.3
7,929	-				-1.0
7,931	+				+2.5
7,931	+				+0.8
7,931	+				+1.0
7,931	+				-0.9
7,931	+				+3.1
7,934	-				+2.1
7,934	-				-2.4
7,934	-				-0.2
7,938	-				-0.2
7,939	-				-1.5
7,939	-				-0.1
7,939	-				-2.5
7,939	-				+0.9
7,946	-				-0.1
7,972	-				+0.6
8,011	+				-0.7
8,019	-				-0.3
8,048	-				-2.3
8,080	-				-1.4
8,080	-				+2.2
8,115	+				+1.1
8,129	+				-0.5
8,159	+				+0.1
8,159	+				+0.6
8,159	+				-0.7
8,166	+				+0.3
8,166	+				-1.3
8,166	+				-0.3
8,166	+				+0.3
8,166	+				-1.0
8,174	+				+0.4
8,174	-				-1.7
8,174	-				+2.5
8,174	-				-0.7
8,174	-				-0.3
8,174	-				+0.3
8,174	-				+1.0
8,174	-				-0.3
8,174	-				+0.6
8,174	-				+2.1
8,174	-				+0.8
8,174	-				-1.1
8,174	-				+1.7
8,174	-				-0.7
8,174	-				-2.0
8,204	+				-0.3
8,212	-				+0.3
8,213	-				+2.1
8,213	-				+1.4
8,213	-				-0.6
8,219	-				-4.5
8,225	+				+0.7
8,225	+				-0.3
8,225	+				-2.7
8,225	+				+1.1
8,225	+				+2.0
8,233	-				-0.2
8,233	-				+0.1
8,233	-				-0.2
8,233	-				-0.2
8,239	-				+1.3
8,239	-				+0.3
8,245	-				+4.1
8,311	+				+3.3
8,311	+				+2.6
8,311	+				+2.9
8,311	+				-0.5
8,311	+				+4.6
8,312	+				+0.6
8,317	+				+0.1
8,317	+				+1.0
8,317	+				+0.0
8,317	+				-3.1
8,317	+				-2.0
8,317	+				+0.9
8,319	-				+0.5
8,319	-				-3.5
8,320	+				+0.1
8,320	+				+0.3
8,320	+				-0.3
8,322	+				-0.3
8,322	+				+0.0
8,322	+				+0.7
8,322	+				+0.6
8,325	-				+0.8
8,325	-				+0.4
8,325	-				-1.1
8,325	-				+0.6
8,330	-				+1.7
8,330	-				+0.0
8,330	-				-0.4
8,330	-				+0.3
8,334	+				+0.6
8,341	-				+0.1
8,356	-				-0.5
8,356	-				-0.5
8,401	+				+0.5
8,409	-				+2.0
8,410	-				+0.4
8,420	-				+4.0
8,466	+				+0.1
8,469	+				+1.6
8,471	+				+0.0
8,476	+				-0.8
8,479	-				+2.0
8,484	-				-0.7
8,484	-				-0.4
8,484	-				-1.3
8,488	+				+0.4
8,512	+				-3.0
8,520	-				+0.8
8,520	-				+0.5
8,520	-				+1.7
8,520	-				+0.1
8,526	-				+1.5
8,535	-				-1.7
8,542	-				+1.2
8,549	+				-2.0
8,551	+				+0.3
8,553	-				+0.8
8,557	-				+1.5
8,567	-				+0.4
8,585	+				-2.0
8,616	+				+0.7
8,619	+				-0.5
8,621	+				-2.2
8,621	+				-0.7
8,623	-				-0.4
8,626	+				+2.3
8,627	-				-0.9
8,628	-				-3.3
8,628	-				+0.6
8,629	-				-3.7
8,631	+				+0.3
8,642	+				+3.2
8,643	-				-1.8
8,652	-				-2.3
8,655	+				+0.5
8,655	+				-0.3
8,657	+				+0.7
8,667	-				+0.5
8,673	+				+1.3
8,680	-				+0.2
8,727	+				+1.3
8,727	+				+1.1
8,734	+				-1.6
8,734	+				+1.3
8,735	+				+1.6
8,742	+				-2.5
8,742	+				-3.7
8,744	-				-1.9
8,750	-				-2.8
8,750	-				+3.3
8,750	-				+0.0
8,750	-				-2.0
8,750	-				+1.0
8,751	+				-0.4
8,752	-				+3.8
8,752	-				-0.5
8,759	-				+0.3