Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3990 and Dshi_3991 are separated by 561 nucleotides Dshi_3991 and Dshi_3992 are separated by 1 nucleotides Dshi_3992 and Dshi_3993 are separated by 26 nucleotides
Dshi_3990: Dshi_3990 - hypothetical protein (RefSeq), at 52,923 to 53,516
_3990
Dshi_3991: Dshi_3991 - hypothetical protein (RefSeq), at 54,078 to 54,284
_3991
Dshi_3992: Dshi_3992 - no description, at 54,286 to 54,797
_3992
Dshi_3993: Dshi_3993 - hypothetical protein (RefSeq), at 54,824 to 55,849
_3993
Position (kb) 54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.365 kb on + strand, within Dshi_3990 at 53.454 kb on + strand, within Dshi_3990 at 53.462 kb on - strand at 53.502 kb on - strand at 53.519 kb on - strand at 53.698 kb on + strand at 53.715 kb on + strand at 53.715 kb on + strand at 53.723 kb on - strand at 53.723 kb on - strand at 53.806 kb on + strand at 53.806 kb on + strand at 53.813 kb on - strand at 54.012 kb on - strand at 54.309 kb on + strand at 54.460 kb on + strand, within Dshi_3992 at 54.469 kb on + strand, within Dshi_3992 at 54.474 kb on + strand, within Dshi_3992 at 54.516 kb on - strand, within Dshi_3992 at 54.664 kb on + strand, within Dshi_3992 at 54.676 kb on - strand, within Dshi_3992 at 54.720 kb on - strand, within Dshi_3992 at 54.720 kb on - strand, within Dshi_3992 at 54.740 kb on + strand, within Dshi_3992 at 54.750 kb on + strand at 54.755 kb on + strand at 54.855 kb on - strand at 54.889 kb on + strand at 54.919 kb on + strand at 55.020 kb on + strand, within Dshi_3993 at 55.119 kb on + strand, within Dshi_3993 at 55.161 kb on + strand, within Dshi_3993 at 55.162 kb on - strand, within Dshi_3993 at 55.245 kb on + strand, within Dshi_3993 at 55.276 kb on - strand, within Dshi_3993 at 55.440 kb on + strand, within Dshi_3993 at 55.519 kb on + strand, within Dshi_3993 at 55.519 kb on + strand, within Dshi_3993 at 55.545 kb on - strand, within Dshi_3993 at 55.738 kb on + strand, within Dshi_3993 at 55.746 kb on - strand, within Dshi_3993
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 53,365 + Dshi_3990 0.74 -0.5 53,454 + Dshi_3990 0.89 +0.2 53,462 - -0.4 53,502 - -0.0 53,519 - +0.3 53,698 + -0.4 53,715 + -0.0 53,715 + +0.2 53,723 - +0.4 53,723 - -0.6 53,806 + -0.5 53,806 + -0.2 53,813 - +1.3 54,012 - +0.5 54,309 + +1.8 54,460 + Dshi_3992 0.34 -0.1 54,469 + Dshi_3992 0.36 +1.4 54,474 + Dshi_3992 0.37 +0.7 54,516 - Dshi_3992 0.45 -2.8 54,664 + Dshi_3992 0.74 -1.5 54,676 - Dshi_3992 0.76 +2.2 54,720 - Dshi_3992 0.85 -0.6 54,720 - Dshi_3992 0.85 -1.4 54,740 + Dshi_3992 0.89 -0.0 54,750 + +1.1 54,755 + +1.0 54,855 - -0.7 54,889 + -0.8 54,919 + +0.4 55,020 + Dshi_3993 0.19 +0.1 55,119 + Dshi_3993 0.29 +0.9 55,161 + Dshi_3993 0.33 -2.4 55,162 - Dshi_3993 0.33 +1.3 55,245 + Dshi_3993 0.41 -2.6 55,276 - Dshi_3993 0.44 -1.7 55,440 + Dshi_3993 0.60 -1.7 55,519 + Dshi_3993 0.68 -0.4 55,519 + Dshi_3993 0.68 +1.2 55,545 - Dshi_3993 0.70 -0.5 55,738 + Dshi_3993 0.89 -0.6 55,746 - Dshi_3993 0.90 +0.5
Or see this region's nucleotide sequence