Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3847 and Dshi_3848 are separated by 99 nucleotides Dshi_3848 and Dshi_3849 are separated by 27 nucleotides Dshi_3849 and Dshi_3850 are separated by 7 nucleotides Dshi_3850 and Dshi_3851 are separated by 63 nucleotides Dshi_3851 and Dshi_3852 are separated by 160 nucleotides
Dshi_3847: Dshi_3847 - ParB domain protein nuclease (RefSeq), at 54,662 to 55,786
_3847
Dshi_3848: Dshi_3848 - hypothetical protein (RefSeq), at 55,886 to 56,080
_3848
Dshi_3849: Dshi_3849 - hypothetical protein (RefSeq), at 56,108 to 56,320
_3849
Dshi_3850: Dshi_3850 - hypothetical protein (RefSeq), at 56,328 to 56,588
_3850
Dshi_3851: Dshi_3851 - hypothetical protein (RefSeq), at 56,652 to 56,915
_3851
Dshi_3852: Dshi_3852 - hypothetical protein (RefSeq), at 57,076 to 58,143
_3852
Position (kb) 55
56
57 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 54.942 kb on - strand, within Dshi_3847 at 54.943 kb on + strand, within Dshi_3847 at 55.022 kb on - strand, within Dshi_3847 at 55.072 kb on + strand, within Dshi_3847 at 55.346 kb on + strand, within Dshi_3847 at 55.469 kb on - strand, within Dshi_3847 at 55.503 kb on - strand, within Dshi_3847 at 55.520 kb on + strand, within Dshi_3847 at 55.751 kb on - strand at 55.775 kb on - strand at 55.852 kb on + strand at 55.906 kb on + strand, within Dshi_3848 at 55.978 kb on - strand, within Dshi_3848 at 56.085 kb on - strand at 56.088 kb on + strand at 56.089 kb on + strand at 56.097 kb on - strand at 56.098 kb on + strand at 56.098 kb on + strand at 56.098 kb on + strand at 56.106 kb on - strand at 56.108 kb on - strand at 56.108 kb on - strand at 56.113 kb on - strand at 56.114 kb on - strand at 56.127 kb on + strand at 56.132 kb on + strand, within Dshi_3849 at 56.155 kb on + strand, within Dshi_3849 at 56.181 kb on - strand, within Dshi_3849 at 56.181 kb on - strand, within Dshi_3849 at 56.206 kb on + strand, within Dshi_3849 at 56.215 kb on - strand, within Dshi_3849 at 56.241 kb on + strand, within Dshi_3849 at 56.249 kb on - strand, within Dshi_3849 at 56.254 kb on - strand, within Dshi_3849 at 56.324 kb on + strand at 56.326 kb on + strand at 56.327 kb on - strand at 56.354 kb on + strand, within Dshi_3850 at 56.372 kb on - strand, within Dshi_3850 at 56.396 kb on + strand, within Dshi_3850 at 56.404 kb on - strand, within Dshi_3850 at 56.414 kb on - strand, within Dshi_3850 at 56.414 kb on - strand, within Dshi_3850 at 56.441 kb on - strand, within Dshi_3850 at 56.447 kb on - strand, within Dshi_3850 at 56.497 kb on - strand, within Dshi_3850 at 56.509 kb on + strand, within Dshi_3850 at 56.560 kb on + strand, within Dshi_3850 at 56.568 kb on - strand at 56.643 kb on + strand at 56.711 kb on + strand, within Dshi_3851 at 56.754 kb on + strand, within Dshi_3851 at 56.762 kb on - strand, within Dshi_3851 at 56.785 kb on - strand, within Dshi_3851 at 56.835 kb on + strand, within Dshi_3851 at 56.836 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.872 kb on - strand, within Dshi_3851 at 56.887 kb on - strand, within Dshi_3851 at 56.887 kb on - strand, within Dshi_3851 at 56.892 kb on - strand at 57.006 kb on + strand at 57.007 kb on + strand at 57.014 kb on - strand at 57.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 54,942 - Dshi_3847 0.25 -0.1 54,943 + Dshi_3847 0.25 -0.3 55,022 - Dshi_3847 0.32 -2.1 55,072 + Dshi_3847 0.36 -1.0 55,346 + Dshi_3847 0.61 -0.1 55,469 - Dshi_3847 0.72 -0.4 55,503 - Dshi_3847 0.75 +0.4 55,520 + Dshi_3847 0.76 -1.1 55,751 - +0.2 55,775 - -1.0 55,852 + +3.0 55,906 + Dshi_3848 0.10 -3.7 55,978 - Dshi_3848 0.47 -1.5 56,085 - -0.1 56,088 + -0.9 56,089 + -0.5 56,097 - +1.5 56,098 + -2.4 56,098 + +0.1 56,098 + -0.3 56,106 - -0.8 56,108 - +0.9 56,108 - +1.1 56,113 - +0.2 56,114 - +0.9 56,127 + +1.5 56,132 + Dshi_3849 0.11 +0.5 56,155 + Dshi_3849 0.22 -0.1 56,181 - Dshi_3849 0.34 +0.4 56,181 - Dshi_3849 0.34 +0.6 56,206 + Dshi_3849 0.46 +1.6 56,215 - Dshi_3849 0.50 +0.3 56,241 + Dshi_3849 0.62 +0.1 56,249 - Dshi_3849 0.66 +1.5 56,254 - Dshi_3849 0.69 -1.0 56,324 + -0.1 56,326 + +1.4 56,327 - +0.0 56,354 + Dshi_3850 0.10 -1.4 56,372 - Dshi_3850 0.17 -0.3 56,396 + Dshi_3850 0.26 +0.5 56,404 - Dshi_3850 0.29 +3.8 56,414 - Dshi_3850 0.33 +1.2 56,414 - Dshi_3850 0.33 -1.2 56,441 - Dshi_3850 0.43 +0.7 56,447 - Dshi_3850 0.46 -0.8 56,497 - Dshi_3850 0.65 +0.3 56,509 + Dshi_3850 0.69 -0.6 56,560 + Dshi_3850 0.89 +3.5 56,568 - -4.6 56,643 + -0.1 56,711 + Dshi_3851 0.22 +3.4 56,754 + Dshi_3851 0.39 +0.8 56,762 - Dshi_3851 0.42 -1.9 56,785 - Dshi_3851 0.50 -0.9 56,835 + Dshi_3851 0.69 +0.9 56,836 + Dshi_3851 0.70 +2.1 56,856 + Dshi_3851 0.77 -0.0 56,856 + Dshi_3851 0.77 +0.6 56,856 + Dshi_3851 0.77 -0.5 56,856 + Dshi_3851 0.77 +1.5 56,856 + Dshi_3851 0.77 +1.4 56,872 - Dshi_3851 0.83 -1.0 56,887 - Dshi_3851 0.89 -1.2 56,887 - Dshi_3851 0.89 -0.1 56,892 - -0.7 57,006 + +0.1 57,007 + +0.2 57,014 - +1.1 57,015 - -0.9
Or see this region's nucleotide sequence