Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3843

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3841 and Dshi_3842 are separated by 99 nucleotidesDshi_3842 and Dshi_3843 are separated by 142 nucleotidesDshi_3843 and Dshi_3844 are separated by 29 nucleotides Dshi_3841: Dshi_3841 - Glutamate dehydrogenase (NADP(+)) (RefSeq), at 50,414 to 51,757 _3841 Dshi_3842: Dshi_3842 - protein of unknown function DUF1328 (RefSeq), at 51,857 to 52,027 _3842 Dshi_3843: Dshi_3843 - hypothetical protein (RefSeq), at 52,170 to 52,586 _3843 Dshi_3844: Dshi_3844 - cyclic nucleotide-binding protein (RefSeq), at 52,616 to 53,344 _3844 Position (kb) 52 53Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 51.243 kb on + strand, within Dshi_3841at 51.254 kb on - strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.485 kb on - strand, within Dshi_3841at 51.486 kb on + strand, within Dshi_3841at 51.504 kb on - strand, within Dshi_3841at 51.550 kb on + strand, within Dshi_3841at 51.593 kb on - strand, within Dshi_3841at 51.598 kb on - strand, within Dshi_3841at 51.626 kb on - strandat 51.632 kb on - strandat 51.644 kb on + strandat 51.765 kb on + strandat 51.765 kb on + strandat 51.839 kb on - strandat 51.855 kb on + strandat 51.855 kb on + strandat 51.855 kb on + strandat 51.897 kb on - strand, within Dshi_3842at 51.977 kb on - strand, within Dshi_3842at 52.171 kb on - strandat 52.176 kb on - strandat 52.195 kb on + strandat 52.197 kb on + strandat 52.222 kb on + strand, within Dshi_3843at 52.242 kb on + strand, within Dshi_3843at 52.333 kb on + strand, within Dshi_3843at 52.337 kb on + strand, within Dshi_3843at 52.485 kb on + strand, within Dshi_3843at 52.493 kb on - strand, within Dshi_3843at 52.562 kb on - strandat 52.607 kb on - strandat 52.686 kb on - strandat 52.720 kb on - strand, within Dshi_3844at 52.771 kb on + strand, within Dshi_3844at 52.771 kb on + strand, within Dshi_3844at 52.771 kb on + strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.779 kb on - strand, within Dshi_3844at 52.784 kb on - strand, within Dshi_3844at 52.791 kb on + strand, within Dshi_3844at 52.796 kb on + strand, within Dshi_3844at 52.822 kb on - strand, within Dshi_3844at 52.822 kb on - strand, within Dshi_3844at 52.822 kb on - strand, within Dshi_3844at 52.822 kb on - strand, within Dshi_3844at 52.832 kb on + strand, within Dshi_3844at 52.860 kb on - strand, within Dshi_3844at 52.869 kb on + strand, within Dshi_3844at 52.871 kb on + strand, within Dshi_3844at 52.930 kb on - strand, within Dshi_3844at 52.962 kb on - strand, within Dshi_3844at 52.962 kb on - strand, within Dshi_3844at 52.962 kb on - strand, within Dshi_3844at 52.966 kb on + strand, within Dshi_3844at 52.974 kb on - strand, within Dshi_3844at 52.989 kb on + strand, within Dshi_3844at 53.007 kb on - strand, within Dshi_3844at 53.062 kb on - strand, within Dshi_3844at 53.067 kb on - strand, within Dshi_3844at 53.088 kb on - strand, within Dshi_3844at 53.090 kb on - strand, within Dshi_3844at 53.126 kb on - strand, within Dshi_3844at 53.136 kb on - strand, within Dshi_3844at 53.141 kb on - strand, within Dshi_3844at 53.232 kb on + strand, within Dshi_3844at 53.483 kb on + strandat 53.491 kb on - strandat 53.547 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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51,243 + Dshi_3841 0.62 -1.1
51,254 - Dshi_3841 0.62 -0.2
51,381 + Dshi_3841 0.72 -1.7
51,381 + Dshi_3841 0.72 -0.1
51,381 + Dshi_3841 0.72 +0.5
51,485 - Dshi_3841 0.80 -0.7
51,486 + Dshi_3841 0.80 -0.8
51,504 - Dshi_3841 0.81 +0.3
51,550 + Dshi_3841 0.85 +0.2
51,593 - Dshi_3841 0.88 -0.1
51,598 - Dshi_3841 0.88 +2.6
51,626 - +0.5
51,632 - +1.4
51,644 + +2.9
51,765 + +0.5
51,765 + -0.8
51,839 - -0.7
51,855 + -1.9
51,855 + +1.2
51,855 + -1.1
51,897 - Dshi_3842 0.23 -0.4
51,977 - Dshi_3842 0.70 +0.9
52,171 - -1.1
52,176 - +4.5
52,195 + -1.8
52,197 + +0.8
52,222 + Dshi_3843 0.12 +1.9
52,242 + Dshi_3843 0.17 +0.5
52,333 + Dshi_3843 0.39 +0.5
52,337 + Dshi_3843 0.40 +1.7
52,485 + Dshi_3843 0.76 +1.4
52,493 - Dshi_3843 0.77 -0.6
52,562 - +0.8
52,607 - +0.1
52,686 - -0.6
52,720 - Dshi_3844 0.14 -0.9
52,771 + Dshi_3844 0.21 -0.7
52,771 + Dshi_3844 0.21 -0.7
52,771 + Dshi_3844 0.21 +0.9
52,779 - Dshi_3844 0.22 +0.1
52,779 - Dshi_3844 0.22 -1.1
52,779 - Dshi_3844 0.22 -0.2
52,779 - Dshi_3844 0.22 -1.7
52,779 - Dshi_3844 0.22 -0.7
52,779 - Dshi_3844 0.22 +0.1
52,784 - Dshi_3844 0.23 -2.7
52,791 + Dshi_3844 0.24 +1.1
52,796 + Dshi_3844 0.25 +1.0
52,822 - Dshi_3844 0.28 +0.5
52,822 - Dshi_3844 0.28 -1.1
52,822 - Dshi_3844 0.28 -0.5
52,822 - Dshi_3844 0.28 +0.3
52,832 + Dshi_3844 0.30 -1.4
52,860 - Dshi_3844 0.33 -3.9
52,869 + Dshi_3844 0.35 +1.1
52,871 + Dshi_3844 0.35 +0.1
52,930 - Dshi_3844 0.43 +0.6
52,962 - Dshi_3844 0.47 -0.7
52,962 - Dshi_3844 0.47 +2.5
52,962 - Dshi_3844 0.47 -0.3
52,966 + Dshi_3844 0.48 -3.8
52,974 - Dshi_3844 0.49 -0.4
52,989 + Dshi_3844 0.51 -0.9
53,007 - Dshi_3844 0.54 -0.1
53,062 - Dshi_3844 0.61 -0.4
53,067 - Dshi_3844 0.62 +0.7
53,088 - Dshi_3844 0.65 +1.2
53,090 - Dshi_3844 0.65 +2.2
53,126 - Dshi_3844 0.70 +3.5
53,136 - Dshi_3844 0.71 -0.1
53,141 - Dshi_3844 0.72 +3.4
53,232 + Dshi_3844 0.84 +0.5
53,483 + -0.4
53,491 - -3.6
53,547 - +1.7

Or see this region's nucleotide sequence