Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3740

Experiment: Anaero. nitrate (e.a.), marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. nitrate (e.a.), marine broth
146,062	+				+0.0
146,062	+				+0.6
146,062	+				+0.1
146,062	+				-3.2
146,071	+				-1.0
146,079	-				-0.2
146,094	+				-0.8
146,094	+				-0.9
146,099	+				+1.4
146,099	+				+0.3
146,099	+				-0.8
146,099	+				+0.8
146,100	-				-1.2
146,102	-				-3.4
146,102	-				+2.5
146,107	-				-0.9
146,107	-				+0.8
146,107	-				-1.0
146,107	-				+1.6
146,146	+				+0.5
146,201	-				-0.4
146,201	-				-0.0
146,201	-				+1.4
146,240	-				+0.0
146,240	-				+1.0
146,245	-				-0.0
146,255	+				-0.4
146,293	+				-0.3
146,295	+				+2.6
146,302	+				-0.6
146,302	+				-1.9
146,303	+				+0.9
146,334	+				-1.1
146,337	+				+0.0
146,342	-				+0.1
146,351	+				+2.6
146,352	+				+0.9
146,356	-				-0.9
146,358	+				+0.3
146,358	+				-1.4
146,359	-				-2.1
146,359	-				+0.0
146,359	-				+2.3
146,359	-				-1.0
146,382	+				+1.0
146,387	+				+1.5
146,395	-				-1.0
146,403	+				+0.4
146,403	+				+0.8
146,403	+				-2.9
146,403	+				+0.2
146,403	+				+1.6
146,403	+				-0.5
146,403	+				-1.2
146,403	+				+2.0
146,403	+				-1.8
146,411	-				-0.0
146,411	-				-2.4
146,411	-				+0.4
146,411	-				-0.7
146,411	-				+0.2
146,425	-				-0.3
146,428	-				+1.3
146,439	+				-0.1
146,439	+				+1.0
146,439	+				+0.0
146,439	+				+1.9
146,439	+				+0.9
146,439	+				-0.7
146,439	-				+0.9
146,447	-				-1.6
146,447	-				+0.2
146,447	-				-0.3
146,447	-				+0.9
146,459	-				+0.1
146,463	+				+1.2
146,465	+				-2.1
146,482	+				+0.6
146,482	+				+0.1
146,482	+				+0.0
146,490	-				+1.3
146,500	+				+1.3
146,503	-				-4.3
146,505	+				+1.8
146,511	-				-0.3
146,516	+				-0.9
146,516	+				-0.5
146,539	-				+1.7
146,572	+				-0.9
146,574	+				+0.6
146,575	+				+3.0
146,579	+				-0.8
146,582	-				-0.4
146,582	-				-0.4
146,582	-				-0.3
146,586	-				-0.6
146,589	+				+1.4
146,597	+				-1.0
146,597	+				-1.8
146,597	-				+0.5
146,599	+				+2.4
146,605	-				+1.0
146,605	-				+0.5
146,607	+				+1.6
146,607	+				+0.3
146,612	+				+1.0
146,612	+				+0.0
146,612	+				-0.7
146,615	-				-0.1
146,615	-				+1.3
146,620	+				-0.8
146,620	+				-1.3
146,620	-				-0.2
146,620	-				-0.3
146,620	-				-2.7
146,620	-				+0.0
146,620	-				+0.0
146,621	+				-1.6
146,629	-				-0.6
146,629	-				+0.3
146,631	+				-1.8
146,631	+				-1.1
146,631	+				-0.7
146,631	+				+1.1
146,631	+				-0.2
146,631	+				-0.3
146,631	+				+1.2
146,631	+				-1.2
146,639	-				-0.7
146,639	-				-0.4
146,639	-				+0.1
146,639	-				+0.5
146,639	-				+0.4
146,639	-				-2.0
146,639	-				-0.4
146,639	-				-0.5
146,696	+				+0.6
146,698	+				+1.0
146,709	+				+2.1
146,709	+				+0.3
146,717	-				-0.2
146,720	+				-2.4
146,784	-				-0.3
146,805	-				-1.4
146,819	+				+0.1
146,857	+				+1.7
146,881	-				+0.6
146,904	+				+0.1
146,912	-				+0.2
146,927	+				-1.8
146,935	-				+2.6
146,935	-				-1.5
146,935	-				+0.9
146,937	+				-0.4
146,941	+				-1.3
146,941	+				+1.2
146,941	+				+0.0
146,941	+				-1.0
146,941	+				-0.1
146,945	-				+0.5
146,946	+				+0.6
146,949	-				+0.3
146,949	-				-1.3
146,949	-				-3.2
146,954	-				-1.4
146,964	-				+0.3
146,964	-				-0.6
146,975	+				-1.4
146,975	+				+0.2
146,983	-				-0.3
147,007	-				-0.1
147,050	-				-0.8
147,053	-				-0.1
147,065	+				+1.0
147,065	+				+0.7
147,067	+				+0.3
147,104	-		Dshi_3740	0.24	+0.1
147,105	-		Dshi_3740	0.24	+4.2
147,135	-		Dshi_3740	0.39	+0.9
147,139	+		Dshi_3740	0.40	+0.2
147,157	+		Dshi_3740	0.49	+1.0
147,174	+		Dshi_3740	0.57	-0.2
147,195	+		Dshi_3740	0.67	-1.3
147,204	-		Dshi_3740	0.71	+0.6
147,226	-		Dshi_3740	0.82	-2.7
147,293	-				+1.0
147,300	+				-0.8
147,303	-				-0.5
147,307	+				+1.6
147,312	+				+0.5
147,315	-				+0.8
147,315	-				-1.8
147,325	-				-0.4
147,416	+		Dshi_3741	0.14	+2.5
147,416	+		Dshi_3741	0.14	+1.2
147,439	+		Dshi_3741	0.16	+0.3
147,472	+		Dshi_3741	0.20	+0.0
147,474	+		Dshi_3741	0.20	+0.9
147,480	-		Dshi_3741	0.21	+0.4
147,488	+		Dshi_3741	0.22	+2.3
147,517	+		Dshi_3741	0.25	-2.5
147,565	-		Dshi_3741	0.30	+1.1
147,582	+		Dshi_3741	0.32	+0.2
147,590	-		Dshi_3741	0.32	-2.5
147,595	-		Dshi_3741	0.33	+3.6
147,625	+		Dshi_3741	0.36	+0.4
147,625	+		Dshi_3741	0.36	+0.5
147,625	+		Dshi_3741	0.36	+0.8
147,627	+		Dshi_3741	0.36	+1.0
147,633	-		Dshi_3741	0.37	-2.6
147,635	-		Dshi_3741	0.37	+1.3
147,635	-		Dshi_3741	0.37	+0.4
147,650	+		Dshi_3741	0.39	+1.1
147,650	+		Dshi_3741	0.39	+2.0
147,652	+		Dshi_3741	0.39	+1.5
147,657	+		Dshi_3741	0.40	+1.9
147,750	+		Dshi_3741	0.50	-1.2
147,750	+		Dshi_3741	0.50	+0.3
147,756	+		Dshi_3741	0.50	-1.0
147,778	+		Dshi_3741	0.53	+0.9
147,818	-		Dshi_3741	0.57	-1.3
147,825	+		Dshi_3741	0.58	+2.3
147,833	-		Dshi_3741	0.59	+0.4
147,928	-		Dshi_3741	0.69	-0.9
147,928	-		Dshi_3741	0.69	+1.5
147,928	-		Dshi_3741	0.69	+0.2
147,938	-		Dshi_3741	0.70	+0.2
147,958	-		Dshi_3741	0.72	+0.6
147,958	-		Dshi_3741	0.72	-1.5
147,967	+		Dshi_3741	0.73	-0.7
147,975	-		Dshi_3741	0.74	+0.2
148,035	-		Dshi_3741	0.80	-1.0
148,048	+		Dshi_3741	0.82	+1.7
148,056	-		Dshi_3741	0.82	-0.4
148,056	-		Dshi_3741	0.82	+0.8
148,075	-		Dshi_3741	0.84	+1.4
148,093	+		Dshi_3741	0.86	-2.3
148,093	+		Dshi_3741	0.86	+0.2
148,229	-				+0.6
148,238	-				+1.9
148,255	-				-2.1