Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3739

Experiment: Anaero. nitrate (e.a.), marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. nitrate (e.a.), marine broth
144,332	+		Dshi_3738	0.32	-0.2
144,424	-		Dshi_3738	0.39	+0.0
144,442	-		Dshi_3738	0.40	+0.9
144,472	+		Dshi_3738	0.42	+0.5
144,472	+		Dshi_3738	0.42	+1.1
144,480	-		Dshi_3738	0.43	-1.5
144,521	-		Dshi_3738	0.46	+1.8
144,527	+		Dshi_3738	0.46	+1.6
144,527	+		Dshi_3738	0.46	+0.8
144,535	-		Dshi_3738	0.47	+1.7
144,535	-		Dshi_3738	0.47	-0.4
144,542	+		Dshi_3738	0.48	-0.5
144,550	-		Dshi_3738	0.48	+3.0
144,561	+		Dshi_3738	0.49	-1.8
144,585	+		Dshi_3738	0.51	-1.5
144,594	-		Dshi_3738	0.51	-0.8
144,612	+		Dshi_3738	0.53	+0.1
144,617	+		Dshi_3738	0.53	+0.4
144,625	-		Dshi_3738	0.54	-0.4
144,670	+		Dshi_3738	0.57	-1.3
144,707	+		Dshi_3738	0.60	-0.3
144,715	-		Dshi_3738	0.60	-0.7
144,715	-		Dshi_3738	0.60	+0.3
144,715	-		Dshi_3738	0.60	+1.9
144,715	-		Dshi_3738	0.60	-0.6
144,748	+		Dshi_3738	0.63	+0.8
144,772	+		Dshi_3738	0.64	+0.6
144,772	+		Dshi_3738	0.64	-1.7
144,780	-		Dshi_3738	0.65	+1.2
144,796	+		Dshi_3738	0.66	-2.3
144,796	+		Dshi_3738	0.66	+0.6
144,796	+		Dshi_3738	0.66	+0.8
144,796	+		Dshi_3738	0.66	-0.5
144,797	+		Dshi_3738	0.66	+0.5
144,804	-		Dshi_3738	0.67	-0.8
144,822	-		Dshi_3738	0.68	+1.0
144,860	-		Dshi_3738	0.71	+0.2
144,869	+		Dshi_3738	0.72	+1.4
144,885	-		Dshi_3738	0.73	-0.6
144,889	+		Dshi_3738	0.73	-2.7
144,889	+		Dshi_3738	0.73	+1.0
144,889	+		Dshi_3738	0.73	+0.6
144,932	+		Dshi_3738	0.76	+2.9
144,932	-		Dshi_3738	0.76	-0.1
144,950	-		Dshi_3738	0.77	+0.6
145,019	-		Dshi_3738	0.83	-2.8
145,019	-		Dshi_3738	0.83	+0.5
145,054	+		Dshi_3738	0.85	+1.8
145,077	-		Dshi_3738	0.87	-0.7
145,119	+		Dshi_3738	0.90	+0.6
145,119	+		Dshi_3738	0.90	-0.8
145,119	+		Dshi_3738	0.90	+0.5
145,119	+		Dshi_3738	0.90	+0.5
145,119	+		Dshi_3738	0.90	-1.5
145,127	-				-4.3
145,129	+				-1.0
145,129	+				-0.7
145,133	+				+1.3
145,137	-				+0.2
145,137	-				-0.5
145,137	-				-2.5
145,137	-				-0.8
145,137	-				-0.0
145,137	-				+1.7
145,168	+				-1.9
145,200	+				+0.0
145,237	+				+0.4
145,248	+				+0.0
145,262	-				-0.0
145,268	+				-0.1
145,268	+				-1.4
145,279	+				-1.0
145,323	-				+0.4
145,352	-				+0.4
145,356	-				+0.8
145,373	-				-0.7
145,390	-		Dshi_3739	0.12	+0.6
145,445	-		Dshi_3739	0.18	+0.4
145,446	-		Dshi_3739	0.18	+0.2
145,446	-		Dshi_3739	0.18	+0.1
145,470	+		Dshi_3739	0.21	-3.0
145,470	+		Dshi_3739	0.21	-0.7
145,477	-		Dshi_3739	0.22	-1.6
145,506	+		Dshi_3739	0.25	+0.6
145,515	+		Dshi_3739	0.26	-0.3
145,528	+		Dshi_3739	0.28	+0.9
145,560	+		Dshi_3739	0.32	+1.4
145,560	+		Dshi_3739	0.32	-1.2
145,568	-		Dshi_3739	0.33	-0.1
145,593	-		Dshi_3739	0.35	+0.5
145,606	+		Dshi_3739	0.37	-1.3
145,615	-		Dshi_3739	0.38	-1.8
145,623	-		Dshi_3739	0.39	-1.0
145,662	+		Dshi_3739	0.43	-1.3
145,697	+		Dshi_3739	0.48	+0.7
145,716	+		Dshi_3739	0.50	-0.1
145,724	-		Dshi_3739	0.51	-1.9
145,734	+		Dshi_3739	0.52	-0.5
145,742	-		Dshi_3739	0.53	+0.0
145,742	-		Dshi_3739	0.53	-0.4
145,752	-		Dshi_3739	0.54	-1.0
145,753	-		Dshi_3739	0.54	+1.6
145,764	+		Dshi_3739	0.55	-2.0
145,780	-		Dshi_3739	0.57	+0.0
145,791	-		Dshi_3739	0.59	-2.4
145,809	-		Dshi_3739	0.61	+1.8
145,810	-		Dshi_3739	0.61	+1.0
145,820	+		Dshi_3739	0.62	+0.5
145,826	+		Dshi_3739	0.63	-0.6
145,826	+		Dshi_3739	0.63	+0.6
145,826	+		Dshi_3739	0.63	-1.1
145,826	+		Dshi_3739	0.63	-0.5
145,826	+		Dshi_3739	0.63	+1.5
145,834	-		Dshi_3739	0.64	-0.3
145,834	-		Dshi_3739	0.64	+1.3
145,834	-		Dshi_3739	0.64	+1.2
145,846	-		Dshi_3739	0.65	+0.3
145,847	+		Dshi_3739	0.65	-1.3
145,848	-		Dshi_3739	0.65	+0.6
145,855	+		Dshi_3739	0.66	-0.5
145,865	+		Dshi_3739	0.67	-0.7
145,874	+		Dshi_3739	0.68	+0.7
145,874	+		Dshi_3739	0.68	+0.1
145,874	+		Dshi_3739	0.68	+0.1
145,874	+		Dshi_3739	0.68	-0.9
145,879	+		Dshi_3739	0.69	-0.1
145,882	-		Dshi_3739	0.69	+0.8
145,882	-		Dshi_3739	0.69	-1.4
145,882	-		Dshi_3739	0.69	-1.5
145,882	-		Dshi_3739	0.69	+0.4
145,918	-		Dshi_3739	0.73	+2.2
145,920	+		Dshi_3739	0.74	-1.6
145,927	-		Dshi_3739	0.74	+1.6
145,928	+		Dshi_3739	0.74	+0.2
145,928	-		Dshi_3739	0.74	-0.9
145,936	-		Dshi_3739	0.75	+0.5
145,945	+		Dshi_3739	0.76	+1.7
145,947	-		Dshi_3739	0.77	-1.1
145,998	-		Dshi_3739	0.83	-0.5
145,998	-		Dshi_3739	0.83	+0.3
146,013	-		Dshi_3739	0.84	-1.1
146,013	-		Dshi_3739	0.84	+2.3
146,013	-		Dshi_3739	0.84	-3.2
146,017	+		Dshi_3739	0.85	+0.3
146,017	+		Dshi_3739	0.85	+0.9
146,062	+				+0.0
146,062	+				+0.6
146,062	+				+0.1
146,062	+				-3.2
146,071	+				-1.0
146,079	-				-0.2
146,094	+				-0.8
146,094	+				-0.9
146,099	+				+1.4
146,099	+				+0.3
146,099	+				-0.8
146,099	+				+0.8
146,100	-				-1.2
146,102	-				-3.4
146,102	-				+2.5
146,107	-				-0.9
146,107	-				+0.8
146,107	-				-1.0
146,107	-				+1.6
146,146	+				+0.5
146,201	-				-0.4
146,201	-				-0.0
146,201	-				+1.4
146,240	-				+0.0
146,240	-				+1.0
146,245	-				-0.0
146,255	+				-0.4
146,293	+				-0.3
146,295	+				+2.6
146,302	+				-0.6
146,302	+				-1.9
146,303	+				+0.9
146,334	+				-1.1
146,337	+				+0.0
146,342	-				+0.1
146,351	+				+2.6
146,352	+				+0.9
146,356	-				-0.9
146,358	+				+0.3
146,358	+				-1.4
146,359	-				-2.1
146,359	-				+0.0
146,359	-				+2.3
146,359	-				-1.0
146,382	+				+1.0
146,387	+				+1.5
146,395	-				-1.0
146,403	+				+0.4
146,403	+				+0.8
146,403	+				-2.9
146,403	+				+0.2
146,403	+				+1.6
146,403	+				-0.5
146,403	+				-1.2
146,403	+				+2.0
146,403	+				-1.8
146,411	-				-0.0
146,411	-				-2.4
146,411	-				+0.4
146,411	-				-0.7
146,411	-				+0.2
146,425	-				-0.3
146,428	-				+1.3
146,439	+				-0.1
146,439	+				+1.0
146,439	+				+0.0
146,439	+				+1.9
146,439	+				+0.9
146,439	+				-0.7
146,439	-				+0.9
146,447	-				-1.6
146,447	-				+0.2
146,447	-				-0.3
146,447	-				+0.9
146,459	-				+0.1
146,463	+				+1.2
146,465	+				-2.1
146,482	+				+0.6
146,482	+				+0.1
146,482	+				+0.0
146,490	-				+1.3
146,500	+				+1.3
146,503	-				-4.3
146,505	+				+1.8
146,511	-				-0.3
146,516	+				-0.9
146,516	+				-0.5
146,539	-				+1.7
146,572	+				-0.9
146,574	+				+0.6
146,575	+				+3.0
146,579	+				-0.8
146,582	-				-0.4
146,582	-				-0.4
146,582	-				-0.3
146,586	-				-0.6
146,589	+				+1.4
146,597	+				-1.0
146,597	+				-1.8
146,597	-				+0.5
146,599	+				+2.4
146,605	-				+1.0
146,605	-				+0.5
146,607	+				+1.6
146,607	+				+0.3
146,612	+				+1.0
146,612	+				+0.0
146,612	+				-0.7
146,615	-				-0.1
146,615	-				+1.3
146,620	+				-0.8
146,620	+				-1.3
146,620	-				-0.2
146,620	-				-0.3
146,620	-				-2.7
146,620	-				+0.0
146,620	-				+0.0
146,621	+				-1.6
146,629	-				-0.6
146,629	-				+0.3
146,631	+				-1.8
146,631	+				-1.1
146,631	+				-0.7
146,631	+				+1.1
146,631	+				-0.2
146,631	+				-0.3
146,631	+				+1.2
146,631	+				-1.2
146,639	-				-0.7
146,639	-				-0.4
146,639	-				+0.1
146,639	-				+0.5
146,639	-				+0.4
146,639	-				-2.0
146,639	-				-0.4
146,639	-				-0.5
146,696	+				+0.6
146,698	+				+1.0
146,709	+				+2.1
146,709	+				+0.3
146,717	-				-0.2
146,720	+				-2.4
146,784	-				-0.3
146,805	-				-1.4
146,819	+				+0.1
146,857	+				+1.7
146,881	-				+0.6
146,904	+				+0.1
146,912	-				+0.2
146,927	+				-1.8
146,935	-				+2.6
146,935	-				-1.5
146,935	-				+0.9
146,937	+				-0.4
146,941	+				-1.3
146,941	+				+1.2
146,941	+				+0.0
146,941	+				-1.0
146,941	+				-0.1
146,945	-				+0.5
146,946	+				+0.6
146,949	-				+0.3
146,949	-				-1.3
146,949	-				-3.2
146,954	-				-1.4
146,964	-				+0.3
146,964	-				-0.6
146,975	+				-1.4
146,975	+				+0.2
146,983	-				-0.3
147,007	-				-0.1
147,050	-				-0.8
147,053	-				-0.1
147,065	+				+1.0
147,065	+				+0.7
147,067	+				+0.3
147,104	-		Dshi_3740	0.24	+0.1
147,105	-		Dshi_3740	0.24	+4.2
147,135	-		Dshi_3740	0.39	+0.9
147,139	+		Dshi_3740	0.40	+0.2