Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2986

Experiment: Anaero. nitrate (e.a.), marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. nitrate (e.a.), marine broth
3,151,204	+				+0.9
3,151,206	-				+0.9
3,151,208	-				-1.4
3,151,210	+				-1.4
3,151,213	+				+4.6
3,151,218	-				+0.9
3,151,221	+				-0.3
3,151,221	+				+0.1
3,151,223	+				-2.9
3,151,223	+				+0.9
3,151,229	+				-2.4
3,151,231	-				+3.4
3,151,231	-				+1.2
3,151,233	+				-3.2
3,151,233	+				+4.1
3,151,233	+				+0.5
3,151,237	-				-1.3
3,151,243	+				+0.9
3,151,243	+				+0.9
3,151,243	+				+1.8
3,151,245	+				+1.5
3,151,247	+				+0.9
3,151,247	+				-0.6
3,151,251	-				-0.4
3,151,251	-				+0.9
3,151,251	-				+2.2
3,151,255	-				-0.7
3,151,257	+				+0.9
3,151,263	+				+2.9
3,151,263	+				-0.3
3,151,267	+				-1.1
3,151,269	+				-1.8
3,151,269	+				+2.7
3,151,269	+				+0.9
3,151,269	+				+2.9
3,151,275	-				+0.9
3,151,277	-				+0.9
3,151,277	-				+0.4
3,151,277	-				-2.1
3,151,277	-				+1.3
3,151,277	-				+0.9
3,151,277	-				-1.3
3,151,277	-				-2.8
3,151,277	-				+0.9
3,151,278	+				+3.8
3,151,282	+				-3.1
3,151,299	-				+1.4
3,151,300	-				+0.9
3,151,300	-				-1.4
3,151,300	-				-0.2
3,151,301	+				-0.1
3,151,301	+				+3.5
3,151,301	+				+3.2
3,151,301	+				+0.2
3,151,301	+				+0.6
3,151,301	+				+0.9
3,151,301	+				+1.4
3,151,301	+				+2.7
3,151,301	+				+0.9
3,151,301	+				+0.9
3,151,301	+				-0.7
3,151,301	+				+1.6
3,151,301	+				-0.2
3,151,301	+				-0.1
3,151,301	+				-0.5
3,151,301	+				+0.9
3,151,301	+				+5.0
3,151,301	+				+0.3
3,151,301	+				-1.1
3,151,301	+				-0.7
3,151,301	+				+0.6
3,151,301	+				+3.9
3,151,301	+				+0.9
3,151,301	+				+1.2
3,151,301	+				+0.9
3,151,301	+				-2.9
3,151,301	+				+1.5
3,151,301	+				+1.6
3,151,301	+				+0.9
3,151,301	+				-2.1
3,151,301	+				-1.1
3,151,301	+				-1.7
3,151,301	+				+0.9
3,151,301	+				-1.0
3,151,301	+				-0.1
3,151,301	+				+3.2
3,151,301	+				+2.9
3,151,301	+				-0.3
3,151,301	+				+0.8
3,151,301	+				+1.9
3,151,301	+				+1.0
3,151,301	+				+0.2
3,151,301	+				+0.9
3,151,301	+				-0.7
3,151,304	+				+0.9
3,151,304	+				+1.7
3,151,304	+				-1.7
3,151,304	+				-2.4
3,151,304	-				+0.9
3,151,309	-				-2.1
3,151,309	-				+0.9
3,151,309	-				-1.7
3,151,309	-				-0.9
3,151,309	-				-2.3
3,151,309	-				-0.5
3,151,309	-				+4.6
3,151,309	-				-0.7
3,151,309	-				+0.9
3,151,309	-				-1.6
3,151,309	-				-3.0
3,151,309	-				+1.6
3,151,309	-				+3.7
3,151,309	-				+0.6
3,151,309	-				-0.2
3,151,309	-				-0.8
3,151,309	-				+0.9
3,151,309	-				+0.9
3,151,309	-				+1.5
3,151,309	-				-0.7
3,151,309	-				-2.1
3,151,309	-				+0.5
3,151,309	-				+0.9
3,151,309	-				+0.9
3,151,309	-				-1.7
3,151,309	-				+0.9
3,151,309	-				-1.1
3,151,309	-				-0.1
3,151,309	-				+1.7
3,151,309	-				+1.9
3,151,309	-				+0.9
3,151,309	-				-1.4
3,151,309	-				-0.0
3,151,309	-				+0.9
3,151,309	-				+1.6
3,151,309	-				+0.9
3,151,309	-				+0.3
3,151,309	-				-0.1
3,151,309	-				-1.7
3,151,309	-				-0.9
3,151,309	-				+2.5
3,151,309	-				+1.2
3,151,309	-				-2.4
3,151,309	-				-0.0
3,151,309	-				+0.9
3,151,309	-				+0.4
3,151,309	-				-1.2
3,151,309	-				+0.9
3,151,309	-				+0.9
3,151,309	-				+0.0
3,151,309	-				+1.2
3,151,309	-				-1.7
3,151,309	-				+3.5
3,151,309	-				-0.7
3,151,309	-				+3.0
3,151,309	-				+0.3
3,151,309	-				-2.8
3,151,309	-				+4.5
3,151,309	-				+1.2
3,151,309	-				+0.9
3,151,309	-				-1.7
3,151,309	-				+0.8
3,151,309	-				+2.0
3,151,309	-				+1.5
3,151,309	-				+0.9
3,151,309	-				-1.9
3,151,311	+				+0.9
3,151,311	+				-1.4
3,151,312	-				+1.3
3,151,312	-				-0.1
3,151,312	-				-1.8
3,151,312	-				-0.1
3,151,312	-				-0.6
3,151,312	-				+0.2
3,151,312	-				+0.7
3,151,319	+				+1.9
3,151,319	+				-0.7
3,151,319	-				-1.4
3,151,319	-				-1.1
3,151,319	-				+0.7
3,151,319	-				+2.5
3,151,319	-				-3.3
3,151,319	-				+0.9
3,151,321	-				+0.7
3,151,321	-				-0.1
3,151,322	+				-1.4
3,151,324	+				+0.1
3,151,324	+				+2.5
3,151,324	+				-1.1
3,151,324	+				+2.6
3,151,324	+				-0.7
3,151,324	+				+1.9
3,151,324	+				-1.9
3,151,324	+				+0.3
3,151,324	+				-1.4
3,151,324	+				+1.2
3,151,327	-				+1.2
3,151,329	+				-0.1
3,151,332	-				+0.9
3,151,332	-				-1.7
3,151,332	-				-0.7
3,151,332	-				-0.4
3,151,332	-				-0.7
3,151,332	-				+0.9
3,151,332	-				+1.3
3,151,332	-				-1.7
3,151,332	-				+1.2
3,151,332	-				-1.4
3,151,332	-				-1.7
3,151,332	-				+0.9
3,151,332	-				-1.8
3,151,332	-				+0.7
3,151,332	-				+0.9
3,151,332	-				+0.6
3,151,332	-				+1.6
3,151,332	-				+2.6
3,151,332	-				-2.0
3,151,332	-				+1.4
3,151,332	-				-0.7
3,151,377	+				+0.9
3,151,384	+				+0.5
3,151,387	+				-1.4
3,151,387	+				-0.9
3,151,387	+				+0.9
3,151,387	+				+0.9
3,151,387	+				+1.9
3,151,387	+				+1.9
3,151,395	-				+0.9
3,151,395	-				+0.9
3,151,395	-				+0.4
3,151,395	-				+1.1
3,151,395	-				-1.9
3,151,402	+				+1.6
3,151,402	+				+1.0
3,151,402	+				+0.9
3,151,402	+				-2.7
3,151,404	+				-0.3
3,151,404	+				+0.9
3,151,404	+				-0.1
3,151,404	+				+0.9
3,151,404	+				-2.3
3,151,410	-				+1.9
3,151,410	-				-0.3
3,151,410	-				+1.8
3,151,410	-				+0.5
3,151,410	-				-0.7
3,151,410	-				+0.7
3,151,410	-				-0.1
3,151,412	-				+0.3
3,151,412	-				+3.5
3,151,434	+				+0.9
3,151,434	+				-1.7
3,151,499	+				+2.6
3,151,501	+				-0.9
3,151,501	+				+0.9
3,151,501	+				+0.9
3,151,501	+				+2.5
3,151,501	+				-1.1
3,151,501	+				-1.6
3,151,501	+				+3.2
3,151,501	+				+1.3
3,151,501	+				+0.9
3,151,501	+				-0.7
3,151,501	+				-2.1
3,151,506	-				-0.2
3,151,509	-				+1.9
3,151,509	-				-2.6
3,151,509	-				+0.0
3,151,509	-				-2.3
3,151,509	-				-0.4
3,151,509	-				-0.8
3,151,509	-				+1.9
3,151,509	-				-0.7
3,151,519	+				+0.9
3,151,520	+				+0.9
3,151,520	+				+0.8
3,151,520	+				+2.0
3,151,520	+				+3.7
3,151,520	+				+0.9
3,151,520	+				+0.9
3,151,520	+				+2.9
3,151,521	+				+1.7
3,151,528	-				+2.9
3,151,528	-				+0.3
3,151,528	-				-1.5
3,151,528	-				-1.1
3,151,528	-				-3.2
3,151,528	-				+0.9
3,151,528	-				+1.2
3,151,528	-				-1.1
3,151,528	-				+0.0
3,151,528	-				+0.9
3,151,528	-				-0.6
3,151,528	-				-2.7
3,151,529	-				+1.9
3,151,530	+				+0.3
3,151,532	+				+0.9
3,151,533	+				-0.8
3,151,533	+				+0.5
3,151,533	+				+0.9
3,151,541	-				-0.6
3,151,541	-				+0.1
3,151,541	-				+0.9
3,151,541	-				+0.9
3,151,542	+				+1.5
3,151,550	-				+4.5
3,151,551	-				-0.1
3,151,556	+				+0.9
3,151,557	+				+1.2
3,151,557	+				-1.1
3,151,557	+				+2.9
3,151,557	+				+0.5
3,151,557	+				+1.5
3,151,557	+				+0.3
3,151,557	+				+0.9
3,151,557	+				+1.5
3,151,557	+				-2.9
3,151,565	-				+0.2
3,151,565	-				-0.1
3,151,565	-				+0.0
3,151,565	-				+0.1
3,151,573	+		Dshi_2985	0.10	+0.9
3,151,576	+		Dshi_2985	0.11	+3.9
3,151,581	-		Dshi_2985	0.11	-1.7
3,151,587	-		Dshi_2985	0.12	+1.0
3,151,589	-		Dshi_2985	0.13	-2.7
3,151,594	+		Dshi_2985	0.13	+0.9
3,151,594	+		Dshi_2985	0.13	-1.4
3,151,594	+		Dshi_2985	0.13	+1.2
3,151,594	+		Dshi_2985	0.13	-1.4
3,151,604	-		Dshi_2985	0.15	+2.1
3,151,605	+		Dshi_2985	0.15	-0.7
3,151,608	-		Dshi_2985	0.15	+0.5
3,151,638	+		Dshi_2985	0.20	+0.9
3,151,646	+		Dshi_2985	0.21	+1.6
3,151,646	-		Dshi_2985	0.21	-2.9
3,151,646	-		Dshi_2985	0.21	-2.6
3,151,654	-		Dshi_2985	0.22	+1.5
3,151,657	+		Dshi_2985	0.23	+2.1
3,151,675	-		Dshi_2985	0.26	+1.6
3,151,681	+		Dshi_2985	0.27	+3.4
3,151,681	+		Dshi_2985	0.27	-1.7
3,151,681	+		Dshi_2985	0.27	-2.3
3,151,689	-		Dshi_2985	0.28	+0.3
3,151,689	-		Dshi_2985	0.28	-0.6
3,151,689	-		Dshi_2985	0.28	-1.3
3,151,689	-		Dshi_2985	0.28	+0.6
3,151,729	-		Dshi_2985	0.34	+3.0
3,151,815	-		Dshi_2985	0.47	+1.9
3,151,818	-		Dshi_2985	0.47	-2.7
3,151,818	-		Dshi_2985	0.47	+0.1
3,151,922	+		Dshi_2985	0.63	+4.5
3,151,959	-		Dshi_2985	0.69	-0.1
3,151,975	+		Dshi_2985	0.71	+1.5
3,152,017	+				+1.9
3,152,043	+		Dshi_2985	0.81	+1.2
3,152,043	+		Dshi_2985	0.81	-1.4
3,152,051	-		Dshi_2985	0.83	+0.9
3,152,074	+		Dshi_2985	0.86	+0.9
3,152,093	+		Dshi_2985	0.89	+0.9
3,152,117	-				+0.9
3,152,149	+				+0.9
3,152,171	+				-1.7
3,152,171	+				+4.5
3,152,226	-				+3.5
3,152,382	+		Dshi_2986	0.27	-0.7
3,152,486	-		Dshi_2986	0.42	-0.1
3,152,676	+		Dshi_2986	0.69	-1.7
3,152,885	+				-2.4
3,152,885	+				+0.9
3,152,893	-				-0.3
3,152,893	-				-1.2
3,152,926	-				-1.8
3,152,959	-				+0.9
3,152,959	-				+0.9
3,153,002	-				+2.9
3,153,077	+		Dshi_2987	0.26	+0.9
3,153,188	+		Dshi_2987	0.60	-3.0
3,153,677	+				-2.0
3,153,690	-				+0.9
3,153,690	-				+1.6
3,153,708	+				+1.7
3,153,744	+				-0.6
3,153,786	-				+0.9
3,153,786	-				+0.2
3,153,786	-				-3.5
3,153,808	+		Dshi_2988	0.16	-0.1
3,153,812	+		Dshi_2988	0.17	+2.2
3,153,813	+		Dshi_2988	0.18	+3.2