Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2835

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2834 and Dshi_2835 are separated by 188 nucleotidesDshi_2835 and Dshi_2836 are separated by 99 nucleotides Dshi_2834: Dshi_2834 - integral membrane protein MviN (RefSeq), at 2,991,755 to 2,993,359 _2834 Dshi_2835: Dshi_2835 - Rhomboid family protein (RefSeq), at 2,993,548 to 2,994,231 _2835 Dshi_2836: Dshi_2836 - tryptophanyl-tRNA synthetase (RefSeq), at 2,994,331 to 2,995,356 _2836 Position (kb) 2993 2994 2995Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2993.361 kb on - strandat 2993.370 kb on + strandat 2993.778 kb on - strand, within Dshi_2835at 2993.843 kb on + strand, within Dshi_2835at 2993.935 kb on - strand, within Dshi_2835at 2993.965 kb on + strand, within Dshi_2835at 2993.965 kb on + strand, within Dshi_2835at 2994.227 kb on - strandat 2994.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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2,993,361 - -1.4
2,993,370 + -0.5
2,993,778 - Dshi_2835 0.34 +0.9
2,993,843 + Dshi_2835 0.43 -2.4
2,993,935 - Dshi_2835 0.57 -4.0
2,993,965 + Dshi_2835 0.61 -1.9
2,993,965 + Dshi_2835 0.61 -2.0
2,994,227 - -1.7
2,994,235 - -0.0

Or see this region's nucleotide sequence