Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2280

Experiment: Anaero. nitrate (e.a.), marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. nitrate (e.a.), marine broth
2,404,735	+				-0.3
2,404,736	-				-0.9
2,404,743	-				+0.6
2,404,772	+				-0.5
2,404,811	+				+1.1
2,404,817	+				-0.1
2,404,850	+				-2.7
2,404,858	-				-0.7
2,404,868	-				-0.7
2,404,881	-				-0.2
2,405,030	+				-1.0
2,405,030	+				+0.1
2,405,102	-				-0.0
2,405,116	-		Dshi_2279	0.12	-2.9
2,405,171	+		Dshi_2279	0.19	+0.2
2,405,185	-		Dshi_2279	0.21	-0.3
2,405,235	-		Dshi_2279	0.29	-1.7
2,405,272	-		Dshi_2279	0.34	+3.5
2,405,317	-		Dshi_2279	0.40	-0.4
2,405,409	+		Dshi_2279	0.53	-0.6
2,405,477	+		Dshi_2279	0.63	+0.0
2,405,477	+		Dshi_2279	0.63	+3.1
2,405,558	-		Dshi_2279	0.74	-3.4
2,405,564	-		Dshi_2279	0.75	-0.9
2,405,602	-		Dshi_2279	0.81	-2.1
2,405,705	+				-0.1
2,405,714	-				-0.8
2,405,714	-				+1.1
2,405,760	+				+0.8
2,405,782	+				+0.3
2,405,855	-				-0.6
2,405,872	-				+2.1
2,405,895	+				-2.6
2,405,895	+				+0.9
2,405,895	+				-0.3
2,405,904	-				-0.5
2,405,911	-				-0.2
2,405,919	+				+0.2
2,405,921	-				+0.1
2,405,926	+				-2.4
2,405,927	-				-0.3
2,405,934	-				-0.6
2,405,934	-				+1.4
2,405,997	+		Dshi_2280	0.10	-2.1
2,406,005	-		Dshi_2280	0.11	-1.6
2,406,016	+		Dshi_2280	0.11	+0.2
2,406,106	-		Dshi_2280	0.14	+1.1
2,406,154	-		Dshi_2280	0.16	-1.9
2,406,154	-		Dshi_2280	0.16	+1.2
2,406,161	+		Dshi_2280	0.16	-0.4
2,406,169	-		Dshi_2280	0.17	-0.3
2,406,169	-		Dshi_2280	0.17	-1.4
2,406,173	+		Dshi_2280	0.17	-0.3
2,406,252	-		Dshi_2280	0.20	+0.6
2,406,283	+		Dshi_2280	0.21	-4.2
2,406,299	-		Dshi_2280	0.21	+0.3
2,406,311	+		Dshi_2280	0.22	-0.4
2,406,327	-		Dshi_2280	0.22	+0.0
2,406,475	+		Dshi_2280	0.28	+0.1
2,406,475	+		Dshi_2280	0.28	+1.1
2,406,483	-		Dshi_2280	0.28	+0.9
2,406,492	-		Dshi_2280	0.28	+0.4
2,406,576	-		Dshi_2280	0.31	-0.2
2,406,592	+		Dshi_2280	0.32	+1.3
2,406,657	-		Dshi_2280	0.34	-0.7
2,406,680	-		Dshi_2280	0.35	-1.1
2,406,731	+		Dshi_2280	0.37	-0.9
2,406,732	-		Dshi_2280	0.37	-3.4
2,406,770	+		Dshi_2280	0.38	+0.3
2,406,917	+		Dshi_2280	0.43	-0.7
2,407,002	+		Dshi_2280	0.46	+0.5
2,407,065	+		Dshi_2280	0.49	+0.7
2,407,092	+		Dshi_2280	0.50	-2.5
2,407,110	-		Dshi_2280	0.50	-1.2
2,407,202	-		Dshi_2280	0.54	-0.8
2,407,218	-		Dshi_2280	0.54	-0.1
2,407,287	+		Dshi_2280	0.57	-0.2
2,407,343	-		Dshi_2280	0.59	+1.5
2,407,368	+		Dshi_2280	0.60	-0.3
2,407,376	-		Dshi_2280	0.60	-0.2
2,407,459	+		Dshi_2280	0.63	-0.6
2,407,489	-		Dshi_2280	0.64	+3.7
2,407,505	+		Dshi_2280	0.64	-2.4
2,407,540	-		Dshi_2280	0.66	+0.2
2,407,655	-		Dshi_2280	0.70	-1.9
2,407,664	+		Dshi_2280	0.70	-0.1
2,407,669	+		Dshi_2280	0.70	-0.6
2,407,740	-		Dshi_2280	0.73	-3.0
2,407,780	-		Dshi_2280	0.74	+0.8
2,407,780	-		Dshi_2280	0.74	-1.1
2,407,843	-		Dshi_2280	0.77	+0.4
2,407,885	+		Dshi_2280	0.78	+0.0
2,407,937	+		Dshi_2280	0.80	-1.3
2,407,937	+		Dshi_2280	0.80	-1.6
2,407,937	+		Dshi_2280	0.80	-2.7
2,407,944	-		Dshi_2280	0.80	+1.5
2,407,945	-		Dshi_2280	0.80	+0.6
2,407,945	-		Dshi_2280	0.80	+1.1
2,407,945	-		Dshi_2280	0.80	+0.8
2,407,945	-		Dshi_2280	0.80	-0.2
2,407,945	-		Dshi_2280	0.80	-0.4
2,407,971	+		Dshi_2280	0.81	+0.3
2,407,971	+		Dshi_2280	0.81	-0.3
2,408,037	-		Dshi_2280	0.84	-0.7
2,408,233	+				-0.3
2,408,252	-				-0.5
2,408,269	-				-4.6
2,408,271	-				-0.2
2,408,309	-				-0.2
2,408,314	+				-3.3
2,408,319	-				+0.4
2,408,327	+				+0.2
2,408,335	-				-1.2
2,408,341	+				-0.8
2,408,399	-				-0.5
2,408,448	+				-1.0
2,408,451	+				-2.7
2,408,451	-				+0.3
2,408,459	-				-1.5
2,408,466	-				-0.5
2,408,504	+				-1.1
2,408,512	+				+0.2
2,408,512	+				-0.5
2,408,513	-				-1.0
2,408,513	-				+0.1
2,408,527	+				+1.5
2,408,530	-				-0.6
2,408,544	-				-1.9
2,408,544	-				-2.5
2,408,555	+				+1.5
2,408,555	+				+0.7
2,408,555	+				+0.5
2,408,563	-				+0.1
2,408,563	-				-0.5
2,408,563	-				+0.1
2,408,563	-				-0.2
2,408,569	+				-0.8
2,408,586	+				-0.2
2,408,633	+		Dshi_2281	0.12	-1.2
2,408,635	-		Dshi_2281	0.12	+2.7
2,408,658	-		Dshi_2281	0.15	-0.7
2,408,731	+		Dshi_2281	0.22	-2.1
2,408,766	+		Dshi_2281	0.26	-0.6
2,408,774	-		Dshi_2281	0.27	+1.5
2,408,779	+		Dshi_2281	0.27	-0.3
2,408,789	+		Dshi_2281	0.28	-1.1
2,408,806	-		Dshi_2281	0.30	+0.6
2,408,812	+		Dshi_2281	0.31	+1.2
2,408,812	+		Dshi_2281	0.31	-0.8
2,408,812	+		Dshi_2281	0.31	-2.5
2,408,812	+		Dshi_2281	0.31	+0.4
2,408,812	+		Dshi_2281	0.31	+0.4
2,408,820	-		Dshi_2281	0.31	-1.1
2,408,835	+		Dshi_2281	0.33	+0.5
2,408,841	+		Dshi_2281	0.34	+0.2
2,408,860	+		Dshi_2281	0.36	-0.1
2,408,892	+		Dshi_2281	0.39	+0.7
2,408,900	-		Dshi_2281	0.40	-1.0
2,408,971	-		Dshi_2281	0.47	-2.2
2,408,996	+		Dshi_2281	0.50	-1.2
2,409,033	-		Dshi_2281	0.53	+3.2
2,409,035	+		Dshi_2281	0.54	-4.0
2,409,043	-		Dshi_2281	0.54	-0.7
2,409,045	+		Dshi_2281	0.55	-1.8
2,409,053	-		Dshi_2281	0.55	-0.2
2,409,163	-		Dshi_2281	0.67	+1.5
2,409,228	-		Dshi_2281	0.74	-0.5
2,409,238	-		Dshi_2281	0.75	-0.9
2,409,283	+		Dshi_2281	0.79	-0.8
2,409,283	+		Dshi_2281	0.79	-1.8
2,409,360	+		Dshi_2281	0.87	+3.9
2,409,394	+				+0.7
2,409,430	+				+0.6
2,409,438	-				-1.9
2,409,474	+				-0.8
2,409,476	+				-3.0
2,409,482	-				+0.7
2,409,490	-				+1.9
2,409,491	+				-0.5
2,409,491	+				-0.9