Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2278

Experiment: Anaero. nitrate (e.a.), marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. nitrate (e.a.), marine broth
2,401,304	-		Dshi_2277	0.32	+1.5
2,401,308	+		Dshi_2277	0.33	-0.9
2,401,308	+		Dshi_2277	0.33	-0.8
2,401,311	-		Dshi_2277	0.33	-1.4
2,401,316	-		Dshi_2277	0.33	+3.1
2,401,334	+		Dshi_2277	0.35	+3.9
2,401,347	+		Dshi_2277	0.36	+0.1
2,401,347	+		Dshi_2277	0.36	-0.3
2,401,406	+		Dshi_2277	0.40	-0.6
2,401,472	+		Dshi_2277	0.46	+1.9
2,401,472	+		Dshi_2277	0.46	+1.1
2,401,473	-		Dshi_2277	0.46	-3.2
2,401,497	+		Dshi_2277	0.48	-3.6
2,401,535	-		Dshi_2277	0.51	+1.4
2,401,537	+		Dshi_2277	0.51	+1.2
2,401,538	+		Dshi_2277	0.51	-1.2
2,401,603	+		Dshi_2277	0.56	-0.9
2,401,613	+		Dshi_2277	0.57	+1.1
2,401,627	+		Dshi_2277	0.58	-1.7
2,401,687	+		Dshi_2277	0.63	+0.5
2,401,688	-		Dshi_2277	0.63	+0.1
2,401,747	+		Dshi_2277	0.67	-3.3
2,401,914	+		Dshi_2277	0.80	-1.6
2,401,922	-		Dshi_2277	0.81	-0.0
2,401,929	+		Dshi_2277	0.82	-0.9
2,401,957	-		Dshi_2277	0.84	+1.1
2,401,995	+		Dshi_2277	0.87	-0.1
2,402,009	+		Dshi_2277	0.88	+0.2
2,402,029	-		Dshi_2277	0.89	-4.0
2,402,086	+				-3.7
2,402,092	-				-2.2
2,402,094	-				+1.5
2,402,139	-				+0.8
2,402,231	+				+0.2
2,402,243	+				-0.7
2,402,252	-				-0.6
2,402,291	-				+0.1
2,402,339	+				+0.1
2,402,352	-				-2.8
2,402,395	-				+0.1
2,402,433	+				+1.1
2,402,441	-				-0.2
2,402,464	+				-1.8
2,402,486	+				+0.1
2,402,488	-				-3.2
2,402,494	-				-0.7
2,402,550	+		Dshi_2278	0.11	+1.9
2,402,593	+		Dshi_2278	0.13	+0.3
2,402,601	-		Dshi_2278	0.13	-0.4
2,402,601	-		Dshi_2278	0.13	+3.1
2,402,624	-		Dshi_2278	0.14	+0.5
2,402,660	+		Dshi_2278	0.15	-1.2
2,402,660	+		Dshi_2278	0.15	-1.7
2,402,660	+		Dshi_2278	0.15	-1.8
2,402,665	+		Dshi_2278	0.16	-1.9
2,402,668	-		Dshi_2278	0.16	-0.3
2,402,668	-		Dshi_2278	0.16	-2.0
2,402,668	-		Dshi_2278	0.16	+0.2
2,402,678	-		Dshi_2278	0.16	-0.6
2,402,691	-		Dshi_2278	0.17	+0.1
2,402,712	+		Dshi_2278	0.17	+0.4
2,402,838	+		Dshi_2278	0.22	-1.7
2,402,857	+		Dshi_2278	0.23	-0.9
2,402,864	-		Dshi_2278	0.23	+0.2
2,402,894	+		Dshi_2278	0.24	-0.6
2,402,894	+		Dshi_2278	0.24	+2.1
2,402,924	+		Dshi_2278	0.25	+0.6
2,402,928	+		Dshi_2278	0.25	+0.6
2,402,936	-		Dshi_2278	0.26	-1.6
2,402,961	-		Dshi_2278	0.27	+1.1
2,403,082	+		Dshi_2278	0.31	+0.8
2,403,091	-		Dshi_2278	0.32	-0.3
2,403,130	+		Dshi_2278	0.33	+0.3
2,403,140	+		Dshi_2278	0.33	-0.3
2,403,217	+		Dshi_2278	0.36	+1.3
2,403,217	+		Dshi_2278	0.36	-2.1
2,403,217	+		Dshi_2278	0.36	-0.0
2,403,221	-		Dshi_2278	0.36	+0.4
2,403,227	+		Dshi_2278	0.37	-0.9
2,403,266	+		Dshi_2278	0.38	-1.2
2,403,274	-		Dshi_2278	0.38	-0.7
2,403,323	-		Dshi_2278	0.40	-1.2
2,403,325	+		Dshi_2278	0.40	-0.4
2,403,354	-		Dshi_2278	0.41	-1.2
2,403,359	+		Dshi_2278	0.42	-3.1
2,403,384	+		Dshi_2278	0.43	-2.7
2,403,395	+		Dshi_2278	0.43	-1.3
2,403,395	+		Dshi_2278	0.43	-1.2
2,403,395	+		Dshi_2278	0.43	+0.1
2,403,402	+		Dshi_2278	0.43	-2.9
2,403,403	-		Dshi_2278	0.43	+0.5
2,403,403	-		Dshi_2278	0.43	-0.8
2,403,403	-		Dshi_2278	0.43	-2.5
2,403,403	-		Dshi_2278	0.43	-1.2
2,403,403	-		Dshi_2278	0.43	-1.1
2,403,511	-		Dshi_2278	0.47	-3.2
2,403,566	+		Dshi_2278	0.49	-0.2
2,403,574	+		Dshi_2278	0.50	-0.1
2,403,582	-		Dshi_2278	0.50	+0.9
2,403,670	-		Dshi_2278	0.53	-3.6
2,403,678	-		Dshi_2278	0.54	+0.3
2,403,696	-		Dshi_2278	0.54	-0.5
2,403,713	-		Dshi_2278	0.55	+0.7
2,403,741	+		Dshi_2278	0.56	-1.2
2,403,749	-		Dshi_2278	0.56	+0.1
2,403,782	+		Dshi_2278	0.57	+1.7
2,403,800	-		Dshi_2278	0.58	-2.6
2,403,819	+		Dshi_2278	0.59	-3.5
2,403,965	-		Dshi_2278	0.64	-2.7
2,403,986	+		Dshi_2278	0.65	-2.2
2,403,998	+		Dshi_2278	0.66	-1.8
2,404,011	+		Dshi_2278	0.66	+0.1
2,404,026	-		Dshi_2278	0.67	+0.5
2,404,051	-		Dshi_2278	0.67	+2.4
2,404,060	+		Dshi_2278	0.68	-0.0
2,404,060	+		Dshi_2278	0.68	-1.0
2,404,060	+		Dshi_2278	0.68	-0.3
2,404,065	+		Dshi_2278	0.68	-0.8
2,404,068	-		Dshi_2278	0.68	+0.8
2,404,079	-		Dshi_2278	0.69	+1.1
2,404,093	+		Dshi_2278	0.69	-0.3
2,404,093	+		Dshi_2278	0.69	-1.4
2,404,094	+		Dshi_2278	0.69	-1.7
2,404,210	+		Dshi_2278	0.73	-1.4
2,404,225	+		Dshi_2278	0.74	-1.2
2,404,226	-		Dshi_2278	0.74	-3.8
2,404,228	-		Dshi_2278	0.74	-0.0
2,404,233	-		Dshi_2278	0.74	-0.6
2,404,244	+		Dshi_2278	0.75	+2.3
2,404,244	+		Dshi_2278	0.75	-1.5
2,404,244	+		Dshi_2278	0.75	-0.4
2,404,252	-		Dshi_2278	0.75	+0.6
2,404,252	-		Dshi_2278	0.75	+1.3
2,404,252	-		Dshi_2278	0.75	-3.5
2,404,312	-		Dshi_2278	0.77	-1.0
2,404,317	-		Dshi_2278	0.77	-1.1
2,404,342	+		Dshi_2278	0.78	-0.1
2,404,356	+		Dshi_2278	0.79	+0.2
2,404,383	-		Dshi_2278	0.80	-0.1
2,404,395	-		Dshi_2278	0.80	-1.7
2,404,415	-		Dshi_2278	0.81	-2.1
2,404,417	+		Dshi_2278	0.81	-0.5
2,404,419	+		Dshi_2278	0.81	-0.7
2,404,433	+		Dshi_2278	0.82	+0.0
2,404,515	-		Dshi_2278	0.85	-1.5
2,404,518	+		Dshi_2278	0.85	+0.8
2,404,525	-		Dshi_2278	0.85	+1.8
2,404,532	+		Dshi_2278	0.85	-0.0
2,404,541	-		Dshi_2278	0.86	-0.9
2,404,547	-		Dshi_2278	0.86	-4.4
2,404,553	-		Dshi_2278	0.86	+0.0
2,404,553	-		Dshi_2278	0.86	-0.9
2,404,555	+		Dshi_2278	0.86	-1.8
2,404,583	+		Dshi_2278	0.87	-0.6
2,404,583	+		Dshi_2278	0.87	-0.3
2,404,588	+		Dshi_2278	0.88	-0.1
2,404,588	+		Dshi_2278	0.88	+1.7
2,404,596	-		Dshi_2278	0.88	+1.5
2,404,615	-		Dshi_2278	0.89	+2.2
2,404,634	+		Dshi_2278	0.89	+0.7
2,404,658	+				-2.4
2,404,673	-				-1.0
2,404,735	+				-0.3
2,404,736	-				-0.9
2,404,743	-				+0.6
2,404,772	+				-0.5
2,404,811	+				+1.1
2,404,817	+				-0.1
2,404,850	+				-2.7
2,404,858	-				-0.7
2,404,868	-				-0.7
2,404,881	-				-0.2
2,405,030	+				-1.0
2,405,030	+				+0.1
2,405,102	-				-0.0
2,405,116	-		Dshi_2279	0.12	-2.9
2,405,171	+		Dshi_2279	0.19	+0.2
2,405,185	-		Dshi_2279	0.21	-0.3
2,405,235	-		Dshi_2279	0.29	-1.7
2,405,272	-		Dshi_2279	0.34	+3.5
2,405,317	-		Dshi_2279	0.40	-0.4
2,405,409	+		Dshi_2279	0.53	-0.6
2,405,477	+		Dshi_2279	0.63	+0.0
2,405,477	+		Dshi_2279	0.63	+3.1
2,405,558	-		Dshi_2279	0.74	-3.4
2,405,564	-		Dshi_2279	0.75	-0.9
2,405,602	-		Dshi_2279	0.81	-2.1
2,405,705	+				-0.1
2,405,714	-				-0.8
2,405,714	-				+1.1
2,405,760	+				+0.8
2,405,782	+				+0.3
2,405,855	-				-0.6
2,405,872	-				+2.1
2,405,895	+				-2.6
2,405,895	+				+0.9
2,405,895	+				-0.3
2,405,904	-				-0.5
2,405,911	-				-0.2
2,405,919	+				+0.2