Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1910

Experiment: Anaero. nitrate (e.a.), marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. nitrate (e.a.), marine broth
1,994,271	+		Dshi_1909	0.48	+2.8
1,994,271	+		Dshi_1909	0.48	-0.7
1,994,271	+		Dshi_1909	0.48	-1.7
1,994,272	-		Dshi_1909	0.48	-0.5
1,994,276	+		Dshi_1909	0.48	-0.2
1,994,276	+		Dshi_1909	0.48	-0.5
1,994,276	+		Dshi_1909	0.48	-0.6
1,994,276	+		Dshi_1909	0.48	+0.8
1,994,276	+		Dshi_1909	0.48	-3.4
1,994,276	+		Dshi_1909	0.48	-2.6
1,994,276	+		Dshi_1909	0.48	-0.7
1,994,276	+		Dshi_1909	0.48	-1.2
1,994,276	+		Dshi_1909	0.48	+0.4
1,994,276	+		Dshi_1909	0.48	-0.5
1,994,276	+		Dshi_1909	0.48	+0.1
1,994,276	+		Dshi_1909	0.48	-1.5
1,994,281	+		Dshi_1909	0.49	-0.6
1,994,281	+		Dshi_1909	0.49	+0.6
1,994,281	+		Dshi_1909	0.49	-0.8
1,994,281	+		Dshi_1909	0.49	-0.2
1,994,281	+		Dshi_1909	0.49	-0.1
1,994,281	+		Dshi_1909	0.49	+0.5
1,994,281	+		Dshi_1909	0.49	-1.2
1,994,281	+		Dshi_1909	0.49	-0.7
1,994,281	+		Dshi_1909	0.49	-0.8
1,994,281	+		Dshi_1909	0.49	-1.2
1,994,281	+		Dshi_1909	0.49	+0.8
1,994,281	+		Dshi_1909	0.49	+0.9
1,994,281	+		Dshi_1909	0.49	-0.3
1,994,281	+		Dshi_1909	0.49	-0.0
1,994,281	+		Dshi_1909	0.49	+0.1
1,994,281	+		Dshi_1909	0.49	+0.3
1,994,284	-		Dshi_1909	0.50	+1.2
1,994,284	-		Dshi_1909	0.50	-0.7
1,994,284	-		Dshi_1909	0.50	+0.6
1,994,284	-		Dshi_1909	0.50	+1.8
1,994,284	-		Dshi_1909	0.50	-2.4
1,994,284	-		Dshi_1909	0.50	+2.0
1,994,284	-		Dshi_1909	0.50	-1.6
1,994,284	-		Dshi_1909	0.50	-1.1
1,994,284	-		Dshi_1909	0.50	-0.7
1,994,284	-		Dshi_1909	0.50	-0.3
1,994,284	-		Dshi_1909	0.50	+0.4
1,994,284	-		Dshi_1909	0.50	-3.0
1,994,284	-		Dshi_1909	0.50	-3.2
1,994,284	-		Dshi_1909	0.50	+0.4
1,994,284	-		Dshi_1909	0.50	-1.0
1,994,284	-		Dshi_1909	0.50	-0.0
1,994,284	-		Dshi_1909	0.50	-1.4
1,994,284	-		Dshi_1909	0.50	+0.2
1,994,286	+		Dshi_1909	0.50	-2.3
1,994,286	+		Dshi_1909	0.50	+0.2
1,994,289	-		Dshi_1909	0.50	-2.2
1,994,289	-		Dshi_1909	0.50	+2.8
1,994,289	-		Dshi_1909	0.50	-2.8
1,994,289	-		Dshi_1909	0.50	-1.2
1,994,289	-		Dshi_1909	0.50	+0.2
1,994,289	-		Dshi_1909	0.50	+0.8
1,994,289	-		Dshi_1909	0.50	-2.0
1,994,289	-		Dshi_1909	0.50	+0.8
1,994,294	-		Dshi_1909	0.51	+0.2
1,994,294	-		Dshi_1909	0.51	-0.3
1,994,300	+		Dshi_1909	0.52	-1.1
1,994,300	+		Dshi_1909	0.52	-0.7
1,994,308	+		Dshi_1909	0.53	-2.1
1,994,308	-		Dshi_1909	0.53	-0.7
1,994,319	+		Dshi_1909	0.55	+1.6
1,994,319	+		Dshi_1909	0.55	-0.1
1,994,319	+		Dshi_1909	0.55	-0.9
1,994,319	+		Dshi_1909	0.55	-0.5
1,994,327	-		Dshi_1909	0.56	+0.7
1,994,327	-		Dshi_1909	0.56	-1.7
1,994,327	-		Dshi_1909	0.56	-0.4
1,994,327	-		Dshi_1909	0.56	+0.4
1,994,327	-		Dshi_1909	0.56	-0.7
1,994,327	-		Dshi_1909	0.56	-1.7
1,994,343	+		Dshi_1909	0.59	+0.2
1,994,343	+		Dshi_1909	0.59	+0.8
1,994,344	-		Dshi_1909	0.59	+1.3
1,994,346	+		Dshi_1909	0.59	+0.5
1,994,346	+		Dshi_1909	0.59	+0.6
1,994,351	-		Dshi_1909	0.60	-0.0
1,994,353	-		Dshi_1909	0.60	-0.5
1,994,354	-		Dshi_1909	0.60	+1.1
1,994,355	+		Dshi_1909	0.61	+0.0
1,994,363	-		Dshi_1909	0.62	+0.2
1,994,367	+		Dshi_1909	0.62	+0.1
1,994,370	-		Dshi_1909	0.63	+0.5
1,994,372	+		Dshi_1909	0.63	-2.3
1,994,372	+		Dshi_1909	0.63	+1.3
1,994,380	-		Dshi_1909	0.64	-1.4
1,994,380	-		Dshi_1909	0.64	-0.2
1,994,406	-		Dshi_1909	0.68	-0.7
1,994,406	-		Dshi_1909	0.68	-3.1
1,994,413	+		Dshi_1909	0.69	-0.3
1,994,414	-		Dshi_1909	0.70	-0.2
1,994,421	-		Dshi_1909	0.71	-0.6
1,994,421	-		Dshi_1909	0.71	-1.8
1,994,421	-		Dshi_1909	0.71	-0.3
1,994,426	+		Dshi_1909	0.71	-0.5
1,994,461	+		Dshi_1909	0.77	-1.2
1,994,462	-		Dshi_1909	0.77	-1.2
1,994,493	+		Dshi_1909	0.82	-3.2
1,994,493	+		Dshi_1909	0.82	-0.7
1,994,523	-		Dshi_1909	0.86	-1.2
1,994,523	-		Dshi_1909	0.86	-0.9
1,994,523	-		Dshi_1909	0.86	+0.0
1,994,523	-		Dshi_1909	0.86	-3.0
1,994,528	+		Dshi_1909	0.87	-0.2
1,994,530	+		Dshi_1909	0.87	-3.1
1,994,530	+		Dshi_1909	0.87	+0.6
1,994,530	+		Dshi_1909	0.87	-1.2
1,994,530	+		Dshi_1909	0.87	+0.1
1,994,530	+		Dshi_1909	0.87	+0.4
1,994,530	+		Dshi_1909	0.87	+3.4
1,994,530	+		Dshi_1909	0.87	-0.7
1,994,530	+		Dshi_1909	0.87	-0.6
1,994,530	+		Dshi_1909	0.87	+0.7
1,994,536	-		Dshi_1909	0.88	-3.2
1,994,538	-		Dshi_1909	0.89	+0.4
1,994,538	-		Dshi_1909	0.89	+0.9
1,994,538	-		Dshi_1909	0.89	-0.1
1,994,538	-		Dshi_1909	0.89	+0.0
1,994,538	-		Dshi_1909	0.89	-1.5
1,994,538	-		Dshi_1909	0.89	+0.9
1,994,538	-		Dshi_1909	0.89	+1.8
1,994,538	-		Dshi_1909	0.89	+0.8
1,994,538	-		Dshi_1909	0.89	-0.3
1,994,540	+		Dshi_1909	0.89	+0.9
1,994,540	+		Dshi_1909	0.89	+4.0
1,994,540	+		Dshi_1909	0.89	-0.3
1,994,540	+		Dshi_1909	0.89	-2.2
1,994,540	+		Dshi_1909	0.89	+1.1
1,994,540	+		Dshi_1909	0.89	-0.7
1,994,548	-				+0.3
1,994,548	-				-1.5
1,994,548	-				-0.5
1,994,548	-				-2.5
1,994,564	-				+0.7
1,994,565	-				+0.8
1,994,568	-				-0.9
1,994,572	+				-0.6
1,994,583	+				-3.2
1,994,591	-				-0.7
1,994,591	-				-2.7
1,994,598	+				+0.7
1,994,598	+				-0.7
1,994,598	+				+0.1
1,994,598	+				+0.9
1,994,598	+				+2.2
1,994,598	+				-1.3
1,994,598	+				+1.3
1,994,598	+				-2.9
1,994,598	+				-0.4
1,994,598	+				+0.5
1,994,598	+				-0.6
1,994,598	+				-2.7
1,994,598	+				-0.7
1,994,598	+				-0.4
1,994,598	+				-1.0
1,994,598	+				+0.4
1,994,598	+				-0.2
1,994,598	+				+1.2
1,994,601	-				-2.9
1,994,606	-				-4.0
1,994,606	-				-0.8
1,994,606	-				-1.3
1,994,606	-				+0.2
1,994,606	-				-0.9
1,994,606	-				-0.1
1,994,606	-				+1.4
1,994,606	-				-0.4
1,994,606	-				-1.8
1,994,606	-				-1.2
1,994,606	-				+0.1
1,994,606	-				+0.4
1,994,606	-				-0.5
1,994,606	-				+1.3
1,994,606	-				+2.2
1,994,621	+				-0.3
1,994,629	-				+0.2
1,994,664	+				-0.3
1,994,675	+				-0.8
1,994,683	-				+0.8
1,994,690	+				-0.2
1,994,690	+				-0.3
1,994,690	+				-0.7
1,994,690	+				-0.7
1,994,694	+				-1.6
1,994,698	-				+0.8
1,994,723	+				-4.1
1,994,724	+				+0.4
1,994,725	+				-1.2
1,994,725	+				-2.5
1,994,725	+				-0.5
1,994,725	+				-0.6
1,994,725	+				+0.7
1,994,725	+				+0.5
1,994,725	+				+0.3
1,994,725	+				-1.8
1,994,725	+				+0.4
1,994,725	+				+0.2
1,994,725	+				+1.4
1,994,725	+				-0.6
1,994,725	+				-0.3
1,994,725	+				+0.4
1,994,725	+				-1.5
1,994,725	+				-0.7
1,994,725	+				+0.1
1,994,725	+				+2.8
1,994,725	+				+0.2
1,994,725	+				+0.2
1,994,725	+				+1.4
1,994,725	+				-0.2
1,994,725	+				+0.1
1,994,725	+				-0.3
1,994,725	+				-0.7
1,994,725	+				+1.4
1,994,725	+				-2.0
1,994,725	+				-1.2
1,994,725	+				-1.2
1,994,725	+				-2.9
1,994,725	+				+0.0
1,994,725	+				-2.8
1,994,725	+				-0.6
1,994,725	+				-1.0
1,994,725	+				+1.0
1,994,725	+				+2.8
1,994,725	+				-3.7
1,994,725	+				-0.1
1,994,725	+				+0.5
1,994,725	+				-1.3
1,994,725	+				-1.7
1,994,725	+				-1.1
1,994,725	+				+1.6
1,994,725	+				+0.8
1,994,725	+				-2.2
1,994,725	+				-0.8
1,994,725	+				+0.7
1,994,725	+				+2.1
1,994,725	+				-1.4
1,994,725	+				-1.5
1,994,725	+				-0.4
1,994,731	-				-0.1
1,994,731	-				+3.2
1,994,732	-				-0.0
1,994,732	-				+2.7
1,994,733	-				+0.3
1,994,733	-				-0.6
1,994,733	-				+2.8
1,994,733	-				-0.5
1,994,733	-				-0.9
1,994,733	-				-2.4
1,994,733	-				+1.8
1,994,733	-				-0.2
1,994,733	-				+0.6
1,994,733	-				-0.7
1,994,733	-				-0.6
1,994,733	-				+0.2
1,994,733	-				-1.0
1,994,733	-				+0.3
1,994,733	-				+0.2
1,994,733	-				-0.6
1,994,733	-				-0.6
1,994,733	-				+0.2
1,994,733	-				-0.8
1,994,733	-				-1.0
1,994,733	-				+0.4
1,994,733	-				-1.2
1,994,733	-				+2.7
1,994,733	-				+0.3
1,994,733	-				-0.2
1,994,733	-				-0.4
1,994,733	-				-0.5
1,994,733	-				-0.8
1,994,733	-				-1.3
1,994,733	-				+4.2
1,994,733	-				+1.2
1,994,733	-				+0.4
1,994,733	-				+3.2
1,994,733	-				-2.3
1,994,733	-				+2.4
1,994,733	-				-1.5
1,994,733	-				+0.8
1,994,733	-				-1.6
1,994,733	-				-0.5
1,994,733	-				-0.8
1,994,733	-				-0.4
1,994,733	-				+0.8
1,994,733	-				-1.2
1,994,733	-				-1.2
1,994,733	-				-0.7
1,994,733	-				+0.6
1,994,733	-				-2.7
1,994,733	-				+1.8
1,994,733	-				+0.4
1,994,733	-				+0.2
1,994,733	-				-1.1
1,994,733	-				+1.4
1,994,733	-				+0.8
1,994,733	-				+0.0
1,994,735	-				-2.2
1,994,740	-				-2.3
1,994,746	+				+1.5
1,994,746	+				-0.4
1,994,746	+				-1.3
1,994,746	+				+0.1
1,994,746	+				-0.7
1,994,746	+				-1.6
1,994,746	+				+0.1
1,994,746	+				+1.6
1,994,746	+				+0.2
1,994,746	+				-2.2
1,994,751	+				-0.2
1,994,751	+				-0.3
1,994,751	+				-0.3
1,994,752	+				+1.8
1,994,754	-				+1.9
1,994,754	-				-0.8
1,994,754	-				-0.8
1,994,754	-				-0.9
1,994,754	-				+0.8
1,994,754	-				-0.9
1,994,757	+				-0.1
1,994,757	+				+0.1
1,994,757	+				+1.7
1,994,779	+				+0.3
1,994,779	+				-0.5
1,994,790	+				+1.2
1,994,793	-				-0.1
1,994,798	-				-0.2
1,994,798	-				+0.5
1,994,801	-				+0.2
1,994,804	-				-0.3
1,994,835	+				-2.3
1,994,843	-				-0.6
1,994,843	-				+3.1
1,994,843	-				-0.6
1,994,844	-				-1.0
1,994,845	+				-0.4
1,994,850	+				-2.4
1,994,850	+				-1.2
1,994,853	-				-0.3
1,994,871	-				-1.2
1,994,871	-				-1.0
1,994,895	-				-1.2
1,994,895	-				+0.1
1,994,905	+				-0.2
1,994,911	-				-1.1
1,994,949	+				+0.8
1,994,983	+				-0.2
1,994,983	+				-2.5
1,994,983	+				+0.0
1,994,991	-				-3.1
1,994,991	-				-0.8
1,995,010	+				-1.3
1,995,019	-				-0.3
1,995,026	-				+3.4
1,995,031	+				-0.9
1,995,039	-				+0.4
1,995,052	+				+0.8
1,995,053	+				-0.1
1,995,070	+				-0.1
1,995,080	+				+0.8
1,995,080	+				+0.3
1,995,122	-				-1.3
1,995,130	-				-1.1
1,995,191	+				+0.3
1,995,197	-				-0.3
1,995,197	-				+0.8
1,995,222	+				+0.1
1,995,228	+				+2.8
1,995,230	-				+0.3
1,995,272	-				+1.0
1,995,272	-				-0.6
1,995,279	+				+0.2
1,995,292	+				+0.1
1,995,292	+				+2.7
1,995,292	+				-1.2
1,995,292	+				-1.5
1,995,292	+				+0.9
1,995,300	-				-1.3
1,995,300	-				-1.6
1,995,300	-				+0.3
1,995,314	+				+0.8
1,995,324	+				+0.3
1,995,332	-				-2.9
1,995,332	-				-3.2
1,995,334	-				-0.7
1,995,342	-		Dshi_1910	0.11	+0.3
1,995,342	-		Dshi_1910	0.11	+0.2
1,995,353	-		Dshi_1910	0.12	-1.6
1,995,371	+		Dshi_1910	0.15	-1.3
1,995,379	-		Dshi_1910	0.16	-1.2
1,995,388	-		Dshi_1910	0.18	+0.3
1,995,414	-		Dshi_1910	0.21	-2.4
1,995,446	-		Dshi_1910	0.26	-0.1
1,995,465	+		Dshi_1910	0.29	-0.2
1,995,482	+		Dshi_1910	0.31	-0.8
1,995,507	+		Dshi_1910	0.35	-1.1
1,995,515	-		Dshi_1910	0.36	+0.1
1,995,528	+		Dshi_1910	0.38	+2.4
1,995,573	+		Dshi_1910	0.45	-0.7
1,995,623	+		Dshi_1910	0.52	-0.7
1,995,715	-		Dshi_1910	0.65	+1.2
1,995,715	-		Dshi_1910	0.65	-1.4
1,995,724	-		Dshi_1910	0.67	-0.9
1,995,741	+		Dshi_1910	0.69	+0.2
1,995,749	-		Dshi_1910	0.70	-0.8
1,995,749	-		Dshi_1910	0.70	-0.8
1,995,756	+		Dshi_1910	0.71	-0.2
1,995,756	+		Dshi_1910	0.71	-0.9
1,995,764	-		Dshi_1910	0.73	+3.3
1,995,771	+		Dshi_1910	0.74	-0.6
1,995,786	+		Dshi_1910	0.76	-2.2
1,995,794	-		Dshi_1910	0.77	-1.1
1,995,797	+		Dshi_1910	0.77	-0.1
1,995,803	-		Dshi_1910	0.78	-0.4
1,995,841	+		Dshi_1910	0.84	+3.2
1,995,843	+		Dshi_1910	0.84	+0.3
1,995,848	-		Dshi_1910	0.85	-2.0
1,995,901	-				-2.7
1,995,945	+				+0.8
1,995,945	+				+0.1
1,995,945	+				-0.7
1,995,945	+				-1.7
1,995,952	+				+0.3
1,995,952	+				-0.8
1,995,953	-				-0.2
1,995,953	-				-1.7
1,995,955	-				-0.6
1,995,955	-				-3.2
1,995,960	-				-2.3
1,995,960	-				-0.0
1,995,960	-				-0.0
1,995,960	-				-1.6
1,995,960	-				-0.3
1,995,960	-				+0.8
1,995,961	-				-0.2
1,995,961	-				-2.2
1,995,961	-				-0.0
1,996,001	-		Dshi_1911	0.16	-1.2
1,996,014	+		Dshi_1911	0.19	-3.6
1,996,039	-		Dshi_1911	0.26	-2.2
1,996,050	+		Dshi_1911	0.28	-1.4
1,996,050	+		Dshi_1911	0.28	-0.8
1,996,050	+		Dshi_1911	0.28	+0.3
1,996,055	+		Dshi_1911	0.30	-0.6
1,996,058	-		Dshi_1911	0.30	+0.1
1,996,058	-		Dshi_1911	0.30	+1.1
1,996,095	-		Dshi_1911	0.40	-0.7
1,996,119	-		Dshi_1911	0.46	-0.3
1,996,123	-		Dshi_1911	0.47	+0.1
1,996,128	-		Dshi_1911	0.48	+0.8
1,996,145	-		Dshi_1911	0.52	-0.3
1,996,146	+		Dshi_1911	0.53	-0.5
1,996,146	+		Dshi_1911	0.53	+0.7
1,996,154	+		Dshi_1911	0.55	-0.2
1,996,154	-		Dshi_1911	0.55	-1.6
1,996,154	-		Dshi_1911	0.55	+1.3
1,996,169	+		Dshi_1911	0.58	-2.0
1,996,169	+		Dshi_1911	0.58	+0.1
1,996,240	+		Dshi_1911	0.76	-0.2
1,996,276	-		Dshi_1911	0.85	-0.5
1,996,276	-		Dshi_1911	0.85	+2.9
1,996,276	-		Dshi_1911	0.85	-3.5
1,996,289	+		Dshi_1911	0.89	+2.3
1,996,294	+				-1.9
1,996,294	+				-0.1
1,996,294	+				+0.1
1,996,295	-				-1.2
1,996,297	-				+0.4
1,996,302	-				-1.2
1,996,302	-				+2.6
1,996,317	+				+1.2
1,996,317	+				+0.5
1,996,318	+				-2.0
1,996,318	+				-0.2
1,996,318	-				-1.0
1,996,325	-				-1.1
1,996,329	+				-0.6
1,996,335	-				+0.1
1,996,409	-		Dshi_1912	0.18	-1.9
1,996,457	+		Dshi_1912	0.30	-1.5
1,996,460	-		Dshi_1912	0.30	-1.0
1,996,460	-		Dshi_1912	0.30	-0.4
1,996,462	+		Dshi_1912	0.31	-0.6
1,996,462	+		Dshi_1912	0.31	+0.3
1,996,464	+		Dshi_1912	0.31	-0.4
1,996,464	+		Dshi_1912	0.31	-0.4
1,996,465	-		Dshi_1912	0.32	+3.0
1,996,470	-		Dshi_1912	0.33	+0.4
1,996,472	-		Dshi_1912	0.33	+0.0
1,996,472	-		Dshi_1912	0.33	-3.7
1,996,472	-		Dshi_1912	0.33	-0.0
1,996,472	-		Dshi_1912	0.33	+3.8
1,996,480	-		Dshi_1912	0.35	+1.0
1,996,502	+		Dshi_1912	0.41	+0.9
1,996,548	+		Dshi_1912	0.52	-0.9
1,996,554	+		Dshi_1912	0.53	+0.7
1,996,555	-		Dshi_1912	0.54	-0.4
1,996,584	+		Dshi_1912	0.61	+1.3
1,996,588	+		Dshi_1912	0.62	-3.4
1,996,594	+		Dshi_1912	0.63	+0.3
1,996,635	+		Dshi_1912	0.73	+0.1
1,996,658	-		Dshi_1912	0.79	-2.2
1,996,690	+		Dshi_1912	0.87	+0.0
1,996,690	+		Dshi_1912	0.87	+1.7
1,996,693	-		Dshi_1912	0.88	+2.4
1,996,698	-		Dshi_1912	0.89	+0.8
1,996,702	+		Dshi_1912	0.90	-3.0
1,996,704	+				-0.8