Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1894

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1893 and Dshi_1894 are separated by 11 nucleotidesDshi_1894 and Dshi_1895 are separated by 18 nucleotides Dshi_1893: Dshi_1893 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 1,970,454 to 1,973,216 _1893 Dshi_1894: Dshi_1894 - two component transcriptional regulator, LuxR family (RefSeq), at 1,973,228 to 1,973,842 _1894 Dshi_1895: Dshi_1895 - Hemolysin-type calcium-binding region (RefSeq), at 1,973,861 to 1,976,413 _1895 Position (kb) 1973 1974Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1972.309 kb on + strand, within Dshi_1893at 1972.309 kb on + strand, within Dshi_1893at 1972.349 kb on + strand, within Dshi_1893at 1972.365 kb on + strand, within Dshi_1893at 1972.394 kb on + strand, within Dshi_1893at 1972.413 kb on - strand, within Dshi_1893at 1972.436 kb on + strand, within Dshi_1893at 1972.539 kb on + strand, within Dshi_1893at 1972.545 kb on - strand, within Dshi_1893at 1972.638 kb on - strand, within Dshi_1893at 1972.792 kb on + strand, within Dshi_1893at 1972.951 kb on + strandat 1973.204 kb on - strandat 1973.229 kb on + strandat 1973.383 kb on + strand, within Dshi_1894at 1973.413 kb on + strand, within Dshi_1894at 1973.538 kb on - strand, within Dshi_1894at 1973.590 kb on + strand, within Dshi_1894at 1973.592 kb on + strand, within Dshi_1894at 1973.700 kb on - strand, within Dshi_1894at 1973.748 kb on + strand, within Dshi_1894at 1973.836 kb on + strandat 1973.857 kb on - strandat 1973.877 kb on - strandat 1974.046 kb on + strandat 1974.046 kb on + strandat 1974.180 kb on + strand, within Dshi_1895at 1974.225 kb on - strand, within Dshi_1895at 1974.236 kb on - strand, within Dshi_1895at 1974.398 kb on - strand, within Dshi_1895at 1974.434 kb on + strand, within Dshi_1895at 1974.622 kb on + strand, within Dshi_1895at 1974.669 kb on + strand, within Dshi_1895at 1974.803 kb on + strand, within Dshi_1895

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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1,972,309 + Dshi_1893 0.67 -0.5
1,972,309 + Dshi_1893 0.67 +2.7
1,972,349 + Dshi_1893 0.69 -0.9
1,972,365 + Dshi_1893 0.69 -1.3
1,972,394 + Dshi_1893 0.70 +0.5
1,972,413 - Dshi_1893 0.71 +0.7
1,972,436 + Dshi_1893 0.72 +0.8
1,972,539 + Dshi_1893 0.75 +2.2
1,972,545 - Dshi_1893 0.76 -1.7
1,972,638 - Dshi_1893 0.79 +0.4
1,972,792 + Dshi_1893 0.85 -0.4
1,972,951 + +1.2
1,973,204 - -3.1
1,973,229 + +4.3
1,973,383 + Dshi_1894 0.25 -2.3
1,973,413 + Dshi_1894 0.30 -1.7
1,973,538 - Dshi_1894 0.50 -1.3
1,973,590 + Dshi_1894 0.59 +0.4
1,973,592 + Dshi_1894 0.59 -0.4
1,973,700 - Dshi_1894 0.77 -1.4
1,973,748 + Dshi_1894 0.85 -4.4
1,973,836 + +0.4
1,973,857 - +0.8
1,973,877 - -0.2
1,974,046 + -1.1
1,974,046 + +1.3
1,974,180 + Dshi_1895 0.12 +0.8
1,974,225 - Dshi_1895 0.14 -1.3
1,974,236 - Dshi_1895 0.15 -1.3
1,974,398 - Dshi_1895 0.21 +1.8
1,974,434 + Dshi_1895 0.22 -1.6
1,974,622 + Dshi_1895 0.30 -2.2
1,974,669 + Dshi_1895 0.32 +2.3
1,974,803 + Dshi_1895 0.37 +1.4

Or see this region's nucleotide sequence