Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1893 and Dshi_1894 are separated by 11 nucleotides Dshi_1894 and Dshi_1895 are separated by 18 nucleotides
Dshi_1893: Dshi_1893 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 1,970,454 to 1,973,216
_1893
Dshi_1894: Dshi_1894 - two component transcriptional regulator, LuxR family (RefSeq), at 1,973,228 to 1,973,842
_1894
Dshi_1895: Dshi_1895 - Hemolysin-type calcium-binding region (RefSeq), at 1,973,861 to 1,976,413
_1895
Position (kb)
1973
1974 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1972.309 kb on + strand, within Dshi_1893 at 1972.309 kb on + strand, within Dshi_1893 at 1972.349 kb on + strand, within Dshi_1893 at 1972.365 kb on + strand, within Dshi_1893 at 1972.394 kb on + strand, within Dshi_1893 at 1972.413 kb on - strand, within Dshi_1893 at 1972.436 kb on + strand, within Dshi_1893 at 1972.539 kb on + strand, within Dshi_1893 at 1972.545 kb on - strand, within Dshi_1893 at 1972.638 kb on - strand, within Dshi_1893 at 1972.792 kb on + strand, within Dshi_1893 at 1972.951 kb on + strand at 1973.204 kb on - strand at 1973.229 kb on + strand at 1973.383 kb on + strand, within Dshi_1894 at 1973.413 kb on + strand, within Dshi_1894 at 1973.538 kb on - strand, within Dshi_1894 at 1973.590 kb on + strand, within Dshi_1894 at 1973.592 kb on + strand, within Dshi_1894 at 1973.700 kb on - strand, within Dshi_1894 at 1973.748 kb on + strand, within Dshi_1894 at 1973.836 kb on + strand at 1973.857 kb on - strand at 1973.877 kb on - strand at 1974.046 kb on + strand at 1974.046 kb on + strand at 1974.180 kb on + strand, within Dshi_1895 at 1974.225 kb on - strand, within Dshi_1895 at 1974.236 kb on - strand, within Dshi_1895 at 1974.398 kb on - strand, within Dshi_1895 at 1974.434 kb on + strand, within Dshi_1895 at 1974.622 kb on + strand, within Dshi_1895 at 1974.669 kb on + strand, within Dshi_1895 at 1974.803 kb on + strand, within Dshi_1895
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 1,972,309 + Dshi_1893 0.67 -0.5 1,972,309 + Dshi_1893 0.67 +2.7 1,972,349 + Dshi_1893 0.69 -0.9 1,972,365 + Dshi_1893 0.69 -1.3 1,972,394 + Dshi_1893 0.70 +0.5 1,972,413 - Dshi_1893 0.71 +0.7 1,972,436 + Dshi_1893 0.72 +0.8 1,972,539 + Dshi_1893 0.75 +2.2 1,972,545 - Dshi_1893 0.76 -1.7 1,972,638 - Dshi_1893 0.79 +0.4 1,972,792 + Dshi_1893 0.85 -0.4 1,972,951 + +1.2 1,973,204 - -3.1 1,973,229 + +4.3 1,973,383 + Dshi_1894 0.25 -2.3 1,973,413 + Dshi_1894 0.30 -1.7 1,973,538 - Dshi_1894 0.50 -1.3 1,973,590 + Dshi_1894 0.59 +0.4 1,973,592 + Dshi_1894 0.59 -0.4 1,973,700 - Dshi_1894 0.77 -1.4 1,973,748 + Dshi_1894 0.85 -4.4 1,973,836 + +0.4 1,973,857 - +0.8 1,973,877 - -0.2 1,974,046 + -1.1 1,974,046 + +1.3 1,974,180 + Dshi_1895 0.12 +0.8 1,974,225 - Dshi_1895 0.14 -1.3 1,974,236 - Dshi_1895 0.15 -1.3 1,974,398 - Dshi_1895 0.21 +1.8 1,974,434 + Dshi_1895 0.22 -1.6 1,974,622 + Dshi_1895 0.30 -2.2 1,974,669 + Dshi_1895 0.32 +2.3 1,974,803 + Dshi_1895 0.37 +1.4
Or see this region's nucleotide sequence