Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1789 and Dshi_1790 are separated by 104 nucleotides Dshi_1790 and Dshi_1791 are separated by 1 nucleotides Dshi_1791 and Dshi_1792 overlap by 4 nucleotides Dshi_1792 and Dshi_1793 are separated by 62 nucleotides
Dshi_1789: Dshi_1789 - Pyridoxal 5'-phosphate synthase (RefSeq), at 1,860,527 to 1,861,132
_1789
Dshi_1790: Dshi_1790 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,861,237 to 1,862,055
_1790
Dshi_1791: Dshi_1791 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,057 to 1,862,668
_1791
Dshi_1792: Dshi_1792 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,665 to 1,863,276
_1792
Dshi_1793: Dshi_1793 - Xanthine phosphoribosyltransferase (RefSeq), at 1,863,339 to 1,863,842
_1793
Position (kb)
1862
1863 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1861.149 kb on - strand at 1862.064 kb on - strand at 1862.192 kb on - strand, within Dshi_1791 at 1862.194 kb on + strand, within Dshi_1791 at 1862.228 kb on + strand, within Dshi_1791 at 1862.431 kb on + strand, within Dshi_1791 at 1862.439 kb on - strand, within Dshi_1791 at 1862.511 kb on - strand, within Dshi_1791 at 1862.540 kb on - strand, within Dshi_1791 at 1862.768 kb on + strand, within Dshi_1792 at 1863.005 kb on + strand, within Dshi_1792 at 1863.092 kb on + strand, within Dshi_1792 at 1863.182 kb on + strand, within Dshi_1792 at 1863.190 kb on - strand, within Dshi_1792 at 1863.193 kb on + strand, within Dshi_1792 at 1863.238 kb on + strand at 1863.567 kb on - strand, within Dshi_1793
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 1,861,149 - +0.7 1,862,064 - -2.3 1,862,192 - Dshi_1791 0.22 +0.2 1,862,194 + Dshi_1791 0.22 -0.1 1,862,228 + Dshi_1791 0.28 -1.7 1,862,431 + Dshi_1791 0.61 +3.2 1,862,439 - Dshi_1791 0.62 -1.1 1,862,511 - Dshi_1791 0.74 +2.9 1,862,540 - Dshi_1791 0.79 +0.9 1,862,768 + Dshi_1792 0.17 -3.2 1,863,005 + Dshi_1792 0.56 +1.2 1,863,092 + Dshi_1792 0.70 -2.3 1,863,182 + Dshi_1792 0.84 +0.8 1,863,190 - Dshi_1792 0.86 +2.5 1,863,193 + Dshi_1792 0.86 -1.8 1,863,238 + +0.9 1,863,567 - Dshi_1793 0.45 +2.9
Or see this region's nucleotide sequence