Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1292

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1290 and Dshi_1291 are separated by 232 nucleotidesDshi_1291 and Dshi_1292 overlap by 4 nucleotidesDshi_1292 and Dshi_1293 are separated by 3 nucleotides Dshi_1290: Dshi_1290 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,343,361 to 1,344,371 _1290 Dshi_1291: Dshi_1291 - DNA alkylation repair enzyme (RefSeq), at 1,344,604 to 1,345,305 _1291 Dshi_1292: Dshi_1292 - pyridoxamine 5'-phosphate oxidase-related FMN-binding (RefSeq), at 1,345,302 to 1,345,850 _1292 Dshi_1293: Dshi_1293 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing (RefSeq), at 1,345,854 to 1,347,674 _1293 Position (kb) 1345 1346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1344.359 kb on - strandat 1344.424 kb on - strandat 1344.536 kb on + strandat 1344.851 kb on - strand, within Dshi_1291at 1344.854 kb on - strand, within Dshi_1291at 1344.887 kb on + strand, within Dshi_1291at 1344.895 kb on - strand, within Dshi_1291at 1344.915 kb on - strand, within Dshi_1291at 1344.981 kb on - strand, within Dshi_1291at 1345.412 kb on - strand, within Dshi_1292at 1345.524 kb on - strand, within Dshi_1292at 1345.543 kb on - strand, within Dshi_1292

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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1,344,359 - -3.5
1,344,424 - +0.1
1,344,536 + -1.4
1,344,851 - Dshi_1291 0.35 +0.2
1,344,854 - Dshi_1291 0.36 -0.6
1,344,887 + Dshi_1291 0.40 +0.1
1,344,895 - Dshi_1291 0.41 +0.1
1,344,915 - Dshi_1291 0.44 -0.2
1,344,981 - Dshi_1291 0.54 +1.9
1,345,412 - Dshi_1292 0.20 -0.8
1,345,524 - Dshi_1292 0.40 -1.7
1,345,543 - Dshi_1292 0.44 +0.9

Or see this region's nucleotide sequence