Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1076 and Dshi_1077 are separated by 136 nucleotides Dshi_1077 and Dshi_1078 overlap by 1 nucleotides Dshi_1078 and Dshi_1079 are separated by 12 nucleotides Dshi_1079 and Dshi_1080 are separated by 73 nucleotides
Dshi_1076: Dshi_1076 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 1,104,888 to 1,105,649
_1076
Dshi_1077: Dshi_1077 - phosphoribosylformylglycinamidine synthase, purS (RefSeq), at 1,105,786 to 1,106,016
_1077
Dshi_1078: Dshi_1078 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 1,106,016 to 1,107,053
_1078
Dshi_1079: Dshi_1079 - phosphoribosylformylglycinamidine synthase I (RefSeq), at 1,107,066 to 1,107,737
_1079
Dshi_1080: Dshi_1080 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,107,811 to 1,109,568
_1080
Position (kb) 1106
1107
1108 Strain fitness (log2 ratio) -2
-1
0
1 at 1105.221 kb on + strand, within Dshi_1076 at 1105.283 kb on - strand, within Dshi_1076 at 1105.923 kb on + strand, within Dshi_1077 at 1106.005 kb on + strand at 1106.065 kb on - strand at 1106.176 kb on - strand, within Dshi_1078 at 1106.213 kb on + strand, within Dshi_1078 at 1106.213 kb on + strand, within Dshi_1078 at 1106.311 kb on - strand, within Dshi_1078 at 1106.456 kb on + strand, within Dshi_1078 at 1106.598 kb on - strand, within Dshi_1078 at 1106.899 kb on + strand, within Dshi_1078 at 1107.006 kb on - strand at 1107.132 kb on - strand at 1107.229 kb on + strand, within Dshi_1079 at 1107.601 kb on - strand, within Dshi_1079
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 1,105,221 + Dshi_1076 0.44 -0.0 1,105,283 - Dshi_1076 0.52 -2.4 1,105,923 + Dshi_1077 0.59 -0.0 1,106,005 + +0.5 1,106,065 - +1.0 1,106,176 - Dshi_1078 0.15 -0.5 1,106,213 + Dshi_1078 0.19 -2.0 1,106,213 + Dshi_1078 0.19 -0.6 1,106,311 - Dshi_1078 0.28 +1.0 1,106,456 + Dshi_1078 0.42 -1.2 1,106,598 - Dshi_1078 0.56 +1.0 1,106,899 + Dshi_1078 0.85 -1.8 1,107,006 - -1.4 1,107,132 - +1.0 1,107,229 + Dshi_1079 0.24 +0.7 1,107,601 - Dshi_1079 0.80 -0.6
Or see this region's nucleotide sequence