Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0934 and Dshi_0935 are separated by 107 nucleotides Dshi_0935 and Dshi_0936 are separated by 64 nucleotides Dshi_0936 and Dshi_0937 are separated by 91 nucleotides
Dshi_0934: Dshi_0934 - transposase IS3/IS911 family protein (RefSeq), at 959,824 to 960,150
_0934
Dshi_0935: Dshi_0935 - hypothetical protein (RefSeq), at 960,258 to 960,719
_0935
Dshi_0936: Dshi_0936 - sulfatase (RefSeq), at 960,784 to 963,285
_0936
Dshi_0937: Dshi_0937 - hypothetical protein (RefSeq), at 963,377 to 964,288
_0937
Position (kb) 960
961
962
963
964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 959.902 kb on - strand, within Dshi_0934 at 959.924 kb on + strand, within Dshi_0934 at 959.939 kb on + strand, within Dshi_0934 at 959.987 kb on + strand, within Dshi_0934 at 959.989 kb on + strand, within Dshi_0934 at 960.193 kb on + strand at 960.195 kb on + strand at 960.291 kb on + strand at 960.293 kb on + strand at 960.301 kb on + strand at 960.336 kb on + strand, within Dshi_0935 at 960.346 kb on + strand, within Dshi_0935 at 960.364 kb on - strand, within Dshi_0935 at 960.467 kb on + strand, within Dshi_0935 at 960.493 kb on + strand, within Dshi_0935 at 960.568 kb on - strand, within Dshi_0935 at 960.635 kb on - strand, within Dshi_0935 at 960.740 kb on - strand at 960.764 kb on + strand at 960.855 kb on + strand at 960.913 kb on - strand at 960.930 kb on + strand at 961.042 kb on + strand, within Dshi_0936 at 961.074 kb on - strand, within Dshi_0936 at 961.322 kb on - strand, within Dshi_0936 at 961.381 kb on - strand, within Dshi_0936 at 961.511 kb on + strand, within Dshi_0936 at 961.704 kb on + strand, within Dshi_0936 at 961.706 kb on - strand, within Dshi_0936 at 961.745 kb on - strand, within Dshi_0936 at 961.809 kb on - strand, within Dshi_0936 at 961.812 kb on + strand, within Dshi_0936 at 961.812 kb on + strand, within Dshi_0936 at 961.812 kb on + strand, within Dshi_0936 at 961.830 kb on - strand, within Dshi_0936 at 961.971 kb on + strand, within Dshi_0936 at 961.978 kb on - strand, within Dshi_0936 at 961.996 kb on - strand, within Dshi_0936 at 962.166 kb on + strand, within Dshi_0936 at 962.166 kb on + strand, within Dshi_0936 at 962.174 kb on - strand, within Dshi_0936 at 962.175 kb on - strand, within Dshi_0936 at 962.221 kb on + strand, within Dshi_0936 at 962.222 kb on + strand, within Dshi_0936 at 962.244 kb on - strand, within Dshi_0936 at 962.244 kb on - strand, within Dshi_0936 at 962.322 kb on - strand, within Dshi_0936 at 962.392 kb on + strand, within Dshi_0936 at 962.444 kb on + strand, within Dshi_0936 at 962.514 kb on - strand, within Dshi_0936 at 962.525 kb on - strand, within Dshi_0936 at 962.591 kb on + strand, within Dshi_0936 at 962.664 kb on - strand, within Dshi_0936 at 962.682 kb on - strand, within Dshi_0936 at 962.873 kb on + strand, within Dshi_0936 at 962.897 kb on + strand, within Dshi_0936 at 963.057 kb on - strand at 963.107 kb on - strand at 963.181 kb on + strand at 963.193 kb on + strand at 963.241 kb on - strand at 963.420 kb on + strand at 963.461 kb on - strand at 963.461 kb on - strand at 963.463 kb on + strand at 963.576 kb on + strand, within Dshi_0937 at 963.576 kb on - strand, within Dshi_0937 at 963.674 kb on - strand, within Dshi_0937 at 963.677 kb on + strand, within Dshi_0937 at 963.723 kb on + strand, within Dshi_0937 at 963.757 kb on + strand, within Dshi_0937 at 963.853 kb on - strand, within Dshi_0937 at 963.872 kb on + strand, within Dshi_0937 at 963.949 kb on - strand, within Dshi_0937 at 963.972 kb on - strand, within Dshi_0937 at 963.982 kb on - strand, within Dshi_0937 at 963.992 kb on - strand, within Dshi_0937 at 964.167 kb on - strand, within Dshi_0937 at 964.167 kb on - strand, within Dshi_0937
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 959,902 - Dshi_0934 0.24 -1.9 959,924 + Dshi_0934 0.31 -0.1 959,939 + Dshi_0934 0.35 +0.6 959,987 + Dshi_0934 0.50 +0.9 959,989 + Dshi_0934 0.50 -3.1 960,193 + -0.1 960,195 + -2.0 960,291 + +0.3 960,293 + +2.9 960,301 + +0.0 960,336 + Dshi_0935 0.17 -2.9 960,346 + Dshi_0935 0.19 +1.0 960,364 - Dshi_0935 0.23 -3.7 960,467 + Dshi_0935 0.45 +2.9 960,493 + Dshi_0935 0.51 -0.6 960,568 - Dshi_0935 0.67 -0.7 960,635 - Dshi_0935 0.82 -1.7 960,740 - +2.6 960,764 + -2.0 960,855 + -2.6 960,913 - -0.8 960,930 + +4.2 961,042 + Dshi_0936 0.10 -1.7 961,074 - Dshi_0936 0.12 -0.4 961,322 - Dshi_0936 0.22 -0.2 961,381 - Dshi_0936 0.24 -1.3 961,511 + Dshi_0936 0.29 -1.2 961,704 + Dshi_0936 0.37 -0.3 961,706 - Dshi_0936 0.37 -1.6 961,745 - Dshi_0936 0.38 -1.3 961,809 - Dshi_0936 0.41 +0.0 961,812 + Dshi_0936 0.41 +0.9 961,812 + Dshi_0936 0.41 +0.2 961,812 + Dshi_0936 0.41 +1.5 961,830 - Dshi_0936 0.42 -0.9 961,971 + Dshi_0936 0.47 -3.0 961,978 - Dshi_0936 0.48 +0.1 961,996 - Dshi_0936 0.48 -0.1 962,166 + Dshi_0936 0.55 -0.5 962,166 + Dshi_0936 0.55 +0.6 962,174 - Dshi_0936 0.56 +0.3 962,175 - Dshi_0936 0.56 -1.1 962,221 + Dshi_0936 0.57 -0.0 962,222 + Dshi_0936 0.57 +0.2 962,244 - Dshi_0936 0.58 -0.7 962,244 - Dshi_0936 0.58 -0.9 962,322 - Dshi_0936 0.61 +0.9 962,392 + Dshi_0936 0.64 -2.1 962,444 + Dshi_0936 0.66 +0.6 962,514 - Dshi_0936 0.69 -0.4 962,525 - Dshi_0936 0.70 -0.2 962,591 + Dshi_0936 0.72 -3.2 962,664 - Dshi_0936 0.75 -2.6 962,682 - Dshi_0936 0.76 +0.2 962,873 + Dshi_0936 0.83 -1.1 962,897 + Dshi_0936 0.84 +3.7 963,057 - +3.2 963,107 - -3.9 963,181 + +4.4 963,193 + -0.1 963,241 - +1.9 963,420 + +2.8 963,461 - +0.3 963,461 - +0.5 963,463 + -0.1 963,576 + Dshi_0937 0.22 +1.9 963,576 - Dshi_0937 0.22 +0.4 963,674 - Dshi_0937 0.33 +2.7 963,677 + Dshi_0937 0.33 +0.9 963,723 + Dshi_0937 0.38 +1.9 963,757 + Dshi_0937 0.42 -0.2 963,853 - Dshi_0937 0.52 -0.7 963,872 + Dshi_0937 0.54 +0.9 963,949 - Dshi_0937 0.63 +0.5 963,972 - Dshi_0937 0.65 -0.8 963,982 - Dshi_0937 0.66 -1.0 963,992 - Dshi_0937 0.67 -2.9 964,167 - Dshi_0937 0.87 +0.6 964,167 - Dshi_0937 0.87 +2.3
Or see this region's nucleotide sequence