Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0853 and Dshi_0854 are separated by 84 nucleotides Dshi_0854 and Dshi_0855 are separated by 29 nucleotides Dshi_0855 and Dshi_0856 are separated by 9 nucleotides
Dshi_0853: Dshi_0853 - AMP-dependent synthetase and ligase (RefSeq), at 865,066 to 866,964
_0853
Dshi_0854: Dshi_0854 - hypothetical protein (RefSeq), at 867,049 to 867,252
_0854
Dshi_0855: Dshi_0855 - transglutaminase domain protein (RefSeq), at 867,282 to 868,169
_0855
Dshi_0856: Dshi_0856 - protein of unknown function DUF404 (RefSeq), at 868,179 to 870,593
_0856
Position (kb) 867
868
869 Strain fitness (log2 ratio) -1
0
1
2 at 866.478 kb on + strand, within Dshi_0853 at 866.691 kb on + strand, within Dshi_0853 at 866.692 kb on + strand, within Dshi_0853 at 866.749 kb on + strand, within Dshi_0853 at 866.762 kb on + strand, within Dshi_0853 at 866.933 kb on + strand at 867.029 kb on - strand at 867.073 kb on + strand, within Dshi_0854 at 867.105 kb on + strand, within Dshi_0854 at 867.209 kb on + strand, within Dshi_0854 at 867.250 kb on - strand at 867.322 kb on + strand at 867.350 kb on - strand at 867.455 kb on + strand, within Dshi_0855 at 867.715 kb on - strand, within Dshi_0855 at 868.311 kb on + strand at 868.366 kb on + strand at 868.563 kb on + strand, within Dshi_0856 at 868.932 kb on - strand, within Dshi_0856 at 869.010 kb on - strand, within Dshi_0856 at 869.091 kb on - strand, within Dshi_0856 at 869.166 kb on + strand, within Dshi_0856
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 866,478 + Dshi_0853 0.74 -0.7 866,691 + Dshi_0853 0.86 -1.7 866,692 + Dshi_0853 0.86 +0.4 866,749 + Dshi_0853 0.89 -0.1 866,762 + Dshi_0853 0.89 -0.0 866,933 + -1.0 867,029 - +1.5 867,073 + Dshi_0854 0.12 +2.5 867,105 + Dshi_0854 0.27 -1.4 867,209 + Dshi_0854 0.78 -0.5 867,250 - -0.1 867,322 + -1.7 867,350 - -0.9 867,455 + Dshi_0855 0.19 -0.4 867,715 - Dshi_0855 0.49 +0.3 868,311 + +0.5 868,366 + +1.6 868,563 + Dshi_0856 0.16 -0.7 868,932 - Dshi_0856 0.31 +0.5 869,010 - Dshi_0856 0.34 +1.9 869,091 - Dshi_0856 0.38 -1.1 869,166 + Dshi_0856 0.41 -0.1
Or see this region's nucleotide sequence