Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0851 and Dshi_R0020 are separated by 192 nucleotides Dshi_R0020 and Dshi_0852 are separated by 71 nucleotides Dshi_0852 and Dshi_0853 are separated by 212 nucleotides
Dshi_0851: Dshi_0851 - protein of unknown function DUF159 (RefSeq), at 862,042 to 862,707
_0851
Dshi_R0020: Dshi_R0020 - tRNA-Gly (RefSeq), at 862,900 to 862,973
_R0020
Dshi_0852: Dshi_0852 - lipid A ABC exporter family, fused ATPase and inner membrane subunits (RefSeq), at 863,045 to 864,853
_0852
Dshi_0853: Dshi_0853 - AMP-dependent synthetase and ligase (RefSeq), at 865,066 to 866,964
_0853
Position (kb) 863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 862.140 kb on + strand, within Dshi_0851 at 862.140 kb on - strand, within Dshi_0851 at 862.201 kb on - strand, within Dshi_0851 at 862.215 kb on - strand, within Dshi_0851 at 862.255 kb on + strand, within Dshi_0851 at 862.359 kb on + strand, within Dshi_0851 at 862.367 kb on - strand, within Dshi_0851 at 862.394 kb on + strand, within Dshi_0851 at 862.409 kb on - strand, within Dshi_0851 at 862.425 kb on - strand, within Dshi_0851 at 862.615 kb on + strand, within Dshi_0851 at 863.139 kb on + strand at 863.252 kb on - strand, within Dshi_0852 at 863.268 kb on + strand, within Dshi_0852 at 863.699 kb on + strand, within Dshi_0852 at 863.758 kb on - strand, within Dshi_0852 at 864.668 kb on + strand, within Dshi_0852 at 864.904 kb on - strand at 865.037 kb on + strand at 865.104 kb on + strand at 865.222 kb on + strand at 865.266 kb on + strand, within Dshi_0853 at 865.368 kb on - strand, within Dshi_0853 at 865.368 kb on - strand, within Dshi_0853 at 865.540 kb on + strand, within Dshi_0853 at 865.542 kb on + strand, within Dshi_0853 at 865.554 kb on + strand, within Dshi_0853 at 865.567 kb on - strand, within Dshi_0853 at 865.784 kb on - strand, within Dshi_0853 at 865.814 kb on + strand, within Dshi_0853 at 865.817 kb on - strand, within Dshi_0853 at 865.848 kb on + strand, within Dshi_0853
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 862,140 + Dshi_0851 0.15 +0.9 862,140 - Dshi_0851 0.15 +1.7 862,201 - Dshi_0851 0.24 +0.3 862,215 - Dshi_0851 0.26 -0.7 862,255 + Dshi_0851 0.32 -1.4 862,359 + Dshi_0851 0.48 +1.9 862,367 - Dshi_0851 0.49 +0.7 862,394 + Dshi_0851 0.53 +0.9 862,409 - Dshi_0851 0.55 -0.1 862,425 - Dshi_0851 0.58 -1.6 862,615 + Dshi_0851 0.86 +0.9 863,139 + -3.6 863,252 - Dshi_0852 0.11 +1.5 863,268 + Dshi_0852 0.12 -3.0 863,699 + Dshi_0852 0.36 +0.9 863,758 - Dshi_0852 0.39 -0.1 864,668 + Dshi_0852 0.90 -3.7 864,904 - +2.8 865,037 + +0.9 865,104 + -1.9 865,222 + -1.2 865,266 + Dshi_0853 0.11 -0.1 865,368 - Dshi_0853 0.16 +2.2 865,368 - Dshi_0853 0.16 -0.1 865,540 + Dshi_0853 0.25 -1.7 865,542 + Dshi_0853 0.25 -0.4 865,554 + Dshi_0853 0.26 +0.4 865,567 - Dshi_0853 0.26 +0.7 865,784 - Dshi_0853 0.38 +1.1 865,814 + Dshi_0853 0.39 -1.4 865,817 - Dshi_0853 0.40 -0.5 865,848 + Dshi_0853 0.41 -1.4
Or see this region's nucleotide sequence