Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0841 and Dshi_0842 are separated by 42 nucleotides Dshi_0842 and Dshi_0843 are separated by 113 nucleotides Dshi_0843 and Dshi_0844 overlap by 1 nucleotides Dshi_0844 and Dshi_0845 overlap by 8 nucleotides
Dshi_0841: Dshi_0841 - hypothetical protein (RefSeq), at 852,286 to 853,314
_0841
Dshi_0842: Dshi_0842 - transcriptional regulator, MerR family (RefSeq), at 853,357 to 853,728
_0842
Dshi_0843: Dshi_0843 - thioesterase superfamily protein (RefSeq), at 853,842 to 854,276
_0843
Dshi_0844: Dshi_0844 - thioesterase superfamily protein (RefSeq), at 854,276 to 854,797
_0844
Dshi_0845: Dshi_0845 - MATE efflux family protein (RefSeq), at 854,790 to 856,109
_0845
Position (kb) 853
854
855 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 852.863 kb on + strand, within Dshi_0841 at 852.900 kb on + strand, within Dshi_0841 at 853.059 kb on + strand, within Dshi_0841 at 853.067 kb on - strand, within Dshi_0841 at 853.087 kb on - strand, within Dshi_0841 at 853.087 kb on - strand, within Dshi_0841 at 853.129 kb on - strand, within Dshi_0841 at 853.160 kb on - strand, within Dshi_0841 at 853.191 kb on - strand, within Dshi_0841 at 853.360 kb on + strand at 853.368 kb on - strand at 853.435 kb on + strand, within Dshi_0842 at 853.601 kb on + strand, within Dshi_0842 at 853.601 kb on + strand, within Dshi_0842 at 853.626 kb on + strand, within Dshi_0842 at 853.658 kb on - strand, within Dshi_0842 at 853.667 kb on - strand, within Dshi_0842 at 853.681 kb on + strand, within Dshi_0842 at 853.689 kb on - strand, within Dshi_0842 at 853.725 kb on - strand at 853.742 kb on + strand at 853.744 kb on - strand at 853.815 kb on + strand at 853.816 kb on - strand at 853.831 kb on - strand at 853.838 kb on + strand at 853.838 kb on + strand at 853.846 kb on - strand at 853.857 kb on - strand at 854.042 kb on - strand, within Dshi_0843 at 854.123 kb on - strand, within Dshi_0843 at 854.222 kb on - strand, within Dshi_0843 at 854.284 kb on + strand at 854.682 kb on + strand, within Dshi_0844 at 855.027 kb on + strand, within Dshi_0845 at 855.042 kb on - strand, within Dshi_0845 at 855.053 kb on + strand, within Dshi_0845 at 855.063 kb on + strand, within Dshi_0845 at 855.071 kb on - strand, within Dshi_0845 at 855.102 kb on - strand, within Dshi_0845 at 855.131 kb on + strand, within Dshi_0845 at 855.131 kb on + strand, within Dshi_0845 at 855.139 kb on - strand, within Dshi_0845 at 855.139 kb on - strand, within Dshi_0845 at 855.191 kb on + strand, within Dshi_0845
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 852,863 + Dshi_0841 0.56 +0.9 852,900 + Dshi_0841 0.60 -0.3 853,059 + Dshi_0841 0.75 +1.5 853,067 - Dshi_0841 0.76 +0.9 853,087 - Dshi_0841 0.78 -3.8 853,087 - Dshi_0841 0.78 +0.9 853,129 - Dshi_0841 0.82 +1.4 853,160 - Dshi_0841 0.85 -1.2 853,191 - Dshi_0841 0.88 -3.9 853,360 + -3.1 853,368 - -1.9 853,435 + Dshi_0842 0.21 -0.1 853,601 + Dshi_0842 0.66 +1.3 853,601 + Dshi_0842 0.66 +1.2 853,626 + Dshi_0842 0.72 +0.7 853,658 - Dshi_0842 0.81 +2.3 853,667 - Dshi_0842 0.83 +0.9 853,681 + Dshi_0842 0.87 +3.2 853,689 - Dshi_0842 0.89 -1.1 853,725 - +1.1 853,742 + +0.9 853,744 - +0.9 853,815 + +1.9 853,816 - +1.0 853,831 - -2.1 853,838 + -1.1 853,838 + -1.1 853,846 - -0.1 853,857 - +1.2 854,042 - Dshi_0843 0.46 -0.7 854,123 - Dshi_0843 0.65 +0.9 854,222 - Dshi_0843 0.87 +1.6 854,284 + -0.7 854,682 + Dshi_0844 0.78 +2.9 855,027 + Dshi_0845 0.18 +0.7 855,042 - Dshi_0845 0.19 +0.9 855,053 + Dshi_0845 0.20 -0.1 855,063 + Dshi_0845 0.21 -1.9 855,071 - Dshi_0845 0.21 +0.9 855,102 - Dshi_0845 0.24 -2.4 855,131 + Dshi_0845 0.26 -1.1 855,131 + Dshi_0845 0.26 +0.9 855,139 - Dshi_0845 0.26 -2.1 855,139 - Dshi_0845 0.26 +0.9 855,191 + Dshi_0845 0.30 -2.3
Or see this region's nucleotide sequence