Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0829 and Dshi_0830 overlap by 4 nucleotides Dshi_0830 and Dshi_0831 overlap by 4 nucleotides Dshi_0831 and Dshi_0832 are separated by 0 nucleotides
Dshi_0829: Dshi_0829 - Phosphopentomutase (EC 5.4.2.7) <small>(from data)</small>, at 837,056 to 838,255
_0829
Dshi_0830: Dshi_0830 - Adenosine deaminase (EC 3.5.4.4) <small>(from data)</small>, at 838,252 to 839,247
_0830
Dshi_0831: Dshi_0831 - uracil phosphoribosyltransferase (RefSeq), at 839,244 to 839,876
_0831
Dshi_0832: Dshi_0832 - hypothetical protein (RefSeq), at 839,877 to 840,893
_0832
Position (kb) 839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 838.435 kb on - strand, within Dshi_0830 at 838.516 kb on - strand, within Dshi_0830 at 838.636 kb on + strand, within Dshi_0830 at 838.733 kb on - strand, within Dshi_0830 at 838.746 kb on + strand, within Dshi_0830 at 839.002 kb on - strand, within Dshi_0830 at 839.154 kb on + strand at 839.247 kb on + strand at 839.368 kb on - strand, within Dshi_0831 at 839.408 kb on + strand, within Dshi_0831 at 839.408 kb on + strand, within Dshi_0831 at 839.632 kb on + strand, within Dshi_0831 at 839.646 kb on - strand, within Dshi_0831 at 839.774 kb on - strand, within Dshi_0831 at 839.819 kb on + strand at 839.935 kb on - strand at 839.969 kb on + strand at 840.002 kb on + strand, within Dshi_0832 at 840.213 kb on + strand, within Dshi_0832 at 840.353 kb on + strand, within Dshi_0832 at 840.434 kb on + strand, within Dshi_0832 at 840.594 kb on - strand, within Dshi_0832 at 840.688 kb on - strand, within Dshi_0832 at 840.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 838,435 - Dshi_0830 0.18 -0.4 838,516 - Dshi_0830 0.27 +1.1 838,636 + Dshi_0830 0.39 +0.3 838,733 - Dshi_0830 0.48 +0.9 838,746 + Dshi_0830 0.50 -0.1 839,002 - Dshi_0830 0.75 +0.3 839,154 + -0.6 839,247 + +1.2 839,368 - Dshi_0831 0.20 +2.3 839,408 + Dshi_0831 0.26 -1.1 839,408 + Dshi_0831 0.26 -0.7 839,632 + Dshi_0831 0.61 -1.7 839,646 - Dshi_0831 0.64 +1.1 839,774 - Dshi_0831 0.84 +1.2 839,819 + +1.2 839,935 - +0.4 839,969 + +0.9 840,002 + Dshi_0832 0.12 +3.2 840,213 + Dshi_0832 0.33 -2.6 840,353 + Dshi_0832 0.47 -0.1 840,434 + Dshi_0832 0.55 -2.3 840,594 - Dshi_0832 0.71 +0.9 840,688 - Dshi_0832 0.80 -2.8 840,854 - -1.7
Or see this region's nucleotide sequence