Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0807

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0806 and Dshi_0807 are separated by 6 nucleotidesDshi_0807 and Dshi_0808 are separated by 151 nucleotides Dshi_0806: Dshi_0806 - hypothetical protein (RefSeq), at 814,089 to 815,120 _0806 Dshi_0807: Dshi_0807 - hypothetical protein (RefSeq), at 815,127 to 816,155 _0807 Dshi_0808: Dshi_0808 - MltA-interacting MipA family protein (RefSeq), at 816,307 to 817,050 _0808 Position (kb) 815 816 817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 814.139 kb on + strandat 814.208 kb on + strand, within Dshi_0806at 814.218 kb on + strand, within Dshi_0806at 814.237 kb on - strand, within Dshi_0806at 814.241 kb on + strand, within Dshi_0806at 814.317 kb on + strand, within Dshi_0806at 814.396 kb on + strand, within Dshi_0806at 814.582 kb on - strand, within Dshi_0806at 814.612 kb on + strand, within Dshi_0806at 814.622 kb on - strand, within Dshi_0806at 814.630 kb on - strand, within Dshi_0806at 814.709 kb on + strand, within Dshi_0806at 814.917 kb on + strand, within Dshi_0806at 814.920 kb on - strand, within Dshi_0806at 814.981 kb on - strand, within Dshi_0806at 815.027 kb on + strandat 815.151 kb on - strandat 815.194 kb on + strandat 815.306 kb on - strand, within Dshi_0807at 815.333 kb on + strand, within Dshi_0807at 815.388 kb on + strand, within Dshi_0807at 815.634 kb on - strand, within Dshi_0807at 815.710 kb on + strand, within Dshi_0807at 815.938 kb on - strand, within Dshi_0807at 816.034 kb on - strand, within Dshi_0807at 816.119 kb on - strandat 816.141 kb on - strandat 816.172 kb on + strandat 816.198 kb on - strandat 816.209 kb on + strandat 816.213 kb on - strandat 816.272 kb on + strandat 816.407 kb on + strand, within Dshi_0808at 816.415 kb on - strand, within Dshi_0808at 816.424 kb on + strand, within Dshi_0808at 816.432 kb on - strand, within Dshi_0808at 816.432 kb on - strand, within Dshi_0808at 816.451 kb on - strand, within Dshi_0808at 816.588 kb on + strand, within Dshi_0808at 816.753 kb on + strand, within Dshi_0808at 816.825 kb on - strand, within Dshi_0808at 816.854 kb on - strand, within Dshi_0808at 816.923 kb on + strand, within Dshi_0808at 816.931 kb on - strand, within Dshi_0808at 816.977 kb on + strandat 816.987 kb on - strandat 816.987 kb on - strandat 816.991 kb on - strandat 817.011 kb on + strandat 817.011 kb on + strandat 817.011 kb on + strandat 817.014 kb on - strandat 817.019 kb on - strandat 817.031 kb on - strandat 817.114 kb on + strandat 817.114 kb on - strandat 817.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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814,139 + +1.6
814,208 + Dshi_0806 0.12 +0.4
814,218 + Dshi_0806 0.12 +2.4
814,237 - Dshi_0806 0.14 -0.2
814,241 + Dshi_0806 0.15 -3.1
814,317 + Dshi_0806 0.22 +3.4
814,396 + Dshi_0806 0.30 +0.8
814,582 - Dshi_0806 0.48 -2.6
814,612 + Dshi_0806 0.51 -1.2
814,622 - Dshi_0806 0.52 +0.8
814,630 - Dshi_0806 0.52 +2.4
814,709 + Dshi_0806 0.60 +0.8
814,917 + Dshi_0806 0.80 +2.6
814,920 - Dshi_0806 0.81 -0.8
814,981 - Dshi_0806 0.86 +1.5
815,027 + +2.8
815,151 - -0.7
815,194 + +3.8
815,306 - Dshi_0807 0.17 -2.0
815,333 + Dshi_0807 0.20 -2.2
815,388 + Dshi_0807 0.25 -1.7
815,634 - Dshi_0807 0.49 -2.2
815,710 + Dshi_0807 0.57 -1.3
815,938 - Dshi_0807 0.79 +1.8
816,034 - Dshi_0807 0.88 +0.8
816,119 - +0.8
816,141 - +1.3
816,172 + +0.3
816,198 - -1.2
816,209 + +0.4
816,213 - +0.5
816,272 + +1.8
816,407 + Dshi_0808 0.13 -0.7
816,415 - Dshi_0808 0.15 -1.5
816,424 + Dshi_0808 0.16 -1.0
816,432 - Dshi_0808 0.17 -2.3
816,432 - Dshi_0808 0.17 +0.0
816,451 - Dshi_0808 0.19 +0.6
816,588 + Dshi_0808 0.38 +3.2
816,753 + Dshi_0808 0.60 -0.8
816,825 - Dshi_0808 0.70 -1.4
816,854 - Dshi_0808 0.74 +0.8
816,923 + Dshi_0808 0.83 +0.8
816,931 - Dshi_0808 0.84 -0.8
816,977 + +1.6
816,987 - -0.2
816,987 - -2.6
816,991 - +1.6
817,011 + +0.8
817,011 + +1.2
817,011 + +0.8
817,014 - +1.2
817,019 - +0.3
817,031 - -2.2
817,114 + -0.5
817,114 - +3.2
817,122 - +0.2

Or see this region's nucleotide sequence