Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0751 and Dshi_0752 are separated by 42 nucleotides Dshi_0752 and Dshi_0753 overlap by 13 nucleotides Dshi_0753 and Dshi_0754 are separated by 9 nucleotides Dshi_0754 and Dshi_0755 are separated by 41 nucleotides
Dshi_0751: Dshi_0751 - protein of unknown function DUF344 (RefSeq), at 761,970 to 762,914
_0751
Dshi_0752: Dshi_0752 - protein of unknown function DUF1007 (RefSeq), at 762,957 to 763,637
_0752
Dshi_0753: Dshi_0753 - high-affinity nickel-transporter (RefSeq), at 763,625 to 764,581
_0753
Dshi_0754: Dshi_0754 - Methyltransferase type 11 (RefSeq), at 764,591 to 765,187
_0754
Dshi_0755: Dshi_0755 - MATE efflux family protein (RefSeq), at 765,229 to 766,599
_0755
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 762.662 kb on + strand, within Dshi_0751 at 762.664 kb on - strand, within Dshi_0751 at 762.713 kb on - strand, within Dshi_0751 at 762.803 kb on - strand, within Dshi_0751 at 762.846 kb on - strand at 762.864 kb on + strand at 762.880 kb on - strand at 762.984 kb on + strand at 762.986 kb on + strand at 762.986 kb on + strand at 763.094 kb on + strand, within Dshi_0752 at 763.170 kb on - strand, within Dshi_0752 at 763.219 kb on - strand, within Dshi_0752 at 763.342 kb on + strand, within Dshi_0752 at 763.381 kb on + strand, within Dshi_0752 at 763.606 kb on + strand at 764.018 kb on + strand, within Dshi_0753 at 764.130 kb on - strand, within Dshi_0753 at 764.187 kb on + strand, within Dshi_0753 at 764.637 kb on + strand at 764.673 kb on + strand, within Dshi_0754 at 764.674 kb on - strand, within Dshi_0754 at 764.703 kb on + strand, within Dshi_0754 at 764.865 kb on - strand, within Dshi_0754 at 764.923 kb on + strand, within Dshi_0754 at 765.214 kb on + strand at 765.421 kb on + strand, within Dshi_0755 at 765.456 kb on + strand, within Dshi_0755 at 765.463 kb on + strand, within Dshi_0755
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 762,662 + Dshi_0751 0.73 -1.1 762,664 - Dshi_0751 0.73 -0.7 762,713 - Dshi_0751 0.79 +0.8 762,803 - Dshi_0751 0.88 +0.5 762,846 - +0.9 762,864 + -0.2 762,880 - -0.2 762,984 + -2.8 762,986 + -0.1 762,986 + +3.2 763,094 + Dshi_0752 0.20 -2.6 763,170 - Dshi_0752 0.31 +0.9 763,219 - Dshi_0752 0.38 -1.9 763,342 + Dshi_0752 0.57 +0.5 763,381 + Dshi_0752 0.62 +0.9 763,606 + +1.2 764,018 + Dshi_0753 0.41 +0.9 764,130 - Dshi_0753 0.53 -1.9 764,187 + Dshi_0753 0.59 -0.7 764,637 + +3.2 764,673 + Dshi_0754 0.14 +0.6 764,674 - Dshi_0754 0.14 +2.9 764,703 + Dshi_0754 0.19 -0.2 764,865 - Dshi_0754 0.46 +0.9 764,923 + Dshi_0754 0.56 +2.1 765,214 + +1.6 765,421 + Dshi_0755 0.14 -1.2 765,456 + Dshi_0755 0.17 +2.1 765,463 + Dshi_0755 0.17 +0.2
Or see this region's nucleotide sequence