Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0687 and Dshi_0688 are separated by 141 nucleotides Dshi_0688 and Dshi_0689 overlap by 4 nucleotides Dshi_0689 and Dshi_0690 overlap by 4 nucleotides
Dshi_0687: Dshi_0687 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 692,556 to 693,332
_0687
Dshi_0688: Dshi_0688 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 693,474 to 694,838
_0688
Dshi_0689: Dshi_0689 - isocitrate lyase family protein (RefSeq), at 694,835 to 695,713
_0689
Dshi_0690: Dshi_0690 - isochorismatase hydrolase (RefSeq), at 695,710 to 696,312
_0690
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 692.519 kb on + strand at 692.540 kb on + strand at 692.592 kb on + strand at 692.613 kb on - strand at 692.637 kb on + strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.684 kb on - strand, within Dshi_0687 at 692.805 kb on + strand, within Dshi_0687 at 692.823 kb on + strand, within Dshi_0687 at 692.956 kb on - strand, within Dshi_0687 at 693.112 kb on + strand, within Dshi_0687 at 693.203 kb on + strand, within Dshi_0687 at 693.232 kb on - strand, within Dshi_0687 at 693.368 kb on - strand at 693.393 kb on + strand at 693.440 kb on + strand at 693.477 kb on + strand at 693.511 kb on - strand at 693.654 kb on - strand, within Dshi_0688 at 693.726 kb on - strand, within Dshi_0688 at 693.761 kb on - strand, within Dshi_0688 at 693.780 kb on - strand at 693.816 kb on + strand, within Dshi_0688 at 693.860 kb on - strand, within Dshi_0688 at 693.969 kb on + strand, within Dshi_0688 at 694.060 kb on - strand, within Dshi_0688 at 694.090 kb on - strand, within Dshi_0688 at 694.112 kb on + strand, within Dshi_0688 at 694.121 kb on + strand, within Dshi_0688 at 694.190 kb on - strand, within Dshi_0688 at 694.241 kb on + strand, within Dshi_0688 at 694.284 kb on - strand, within Dshi_0688 at 694.293 kb on + strand, within Dshi_0688 at 694.388 kb on - strand, within Dshi_0688 at 694.536 kb on + strand, within Dshi_0688 at 694.576 kb on + strand, within Dshi_0688 at 694.650 kb on - strand, within Dshi_0688 at 694.697 kb on - strand, within Dshi_0688 at 694.715 kb on - strand at 694.947 kb on - strand at 694.958 kb on - strand, within Dshi_0689 at 694.983 kb on + strand, within Dshi_0689 at 694.991 kb on - strand, within Dshi_0689 at 694.991 kb on - strand, within Dshi_0689 at 695.026 kb on - strand, within Dshi_0689 at 695.034 kb on - strand, within Dshi_0689 at 695.120 kb on - strand, within Dshi_0689 at 695.158 kb on - strand, within Dshi_0689 at 695.168 kb on - strand, within Dshi_0689 at 695.220 kb on + strand, within Dshi_0689 at 695.220 kb on + strand, within Dshi_0689 at 695.220 kb on + strand, within Dshi_0689 at 695.228 kb on - strand at 695.232 kb on + strand, within Dshi_0689 at 695.261 kb on + strand, within Dshi_0689 at 695.323 kb on + strand, within Dshi_0689 at 695.367 kb on + strand, within Dshi_0689 at 695.375 kb on - strand, within Dshi_0689 at 695.375 kb on - strand, within Dshi_0689 at 695.377 kb on + strand, within Dshi_0689 at 695.435 kb on - strand, within Dshi_0689 at 695.458 kb on - strand, within Dshi_0689 at 695.492 kb on - strand, within Dshi_0689 at 695.545 kb on - strand, within Dshi_0689 at 695.566 kb on + strand, within Dshi_0689 at 695.568 kb on + strand, within Dshi_0689 at 695.593 kb on + strand, within Dshi_0689 at 695.767 kb on + strand at 695.775 kb on - strand, within Dshi_0690 at 695.775 kb on - strand, within Dshi_0690 at 695.793 kb on + strand, within Dshi_0690
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 692,519 + +1.0 692,540 + +1.9 692,592 + -0.7 692,613 - +0.8 692,637 + Dshi_0687 0.10 -1.6 692,684 - Dshi_0687 0.16 +1.8 692,684 - Dshi_0687 0.16 +0.3 692,805 + Dshi_0687 0.32 +0.4 692,823 + Dshi_0687 0.34 +0.4 692,956 - Dshi_0687 0.51 +1.6 693,112 + Dshi_0687 0.72 +0.4 693,203 + Dshi_0687 0.83 -2.0 693,232 - Dshi_0687 0.87 -2.7 693,368 - +0.0 693,393 + +1.0 693,440 + +1.0 693,477 + +0.0 693,511 - +3.8 693,654 - Dshi_0688 0.13 +1.3 693,726 - Dshi_0688 0.18 +0.7 693,761 - Dshi_0688 0.21 +2.6 693,780 - +1.0 693,816 + Dshi_0688 0.25 -2.8 693,860 - Dshi_0688 0.28 +0.0 693,969 + Dshi_0688 0.36 -1.0 694,060 - Dshi_0688 0.43 +0.7 694,090 - Dshi_0688 0.45 +2.9 694,112 + Dshi_0688 0.47 +1.0 694,121 + Dshi_0688 0.47 +2.0 694,190 - Dshi_0688 0.52 +3.0 694,241 + Dshi_0688 0.56 +1.8 694,284 - Dshi_0688 0.59 +0.6 694,293 + Dshi_0688 0.60 +0.3 694,388 - Dshi_0688 0.67 +1.0 694,536 + Dshi_0688 0.78 +3.6 694,576 + Dshi_0688 0.81 +0.0 694,650 - Dshi_0688 0.86 +1.0 694,697 - Dshi_0688 0.90 +1.0 694,715 - -1.8 694,947 - +0.0 694,958 - Dshi_0689 0.14 +4.3 694,983 + Dshi_0689 0.17 -2.6 694,991 - Dshi_0689 0.18 +1.0 694,991 - Dshi_0689 0.18 +2.0 695,026 - Dshi_0689 0.22 +3.3 695,034 - Dshi_0689 0.23 +3.0 695,120 - Dshi_0689 0.32 +2.2 695,158 - Dshi_0689 0.37 +1.0 695,168 - Dshi_0689 0.38 +0.0 695,220 + Dshi_0689 0.44 +1.4 695,220 + Dshi_0689 0.44 -1.3 695,220 + Dshi_0689 0.44 -0.7 695,228 - +1.0 695,232 + Dshi_0689 0.45 -0.6 695,261 + Dshi_0689 0.48 +0.8 695,323 + Dshi_0689 0.56 +1.0 695,367 + Dshi_0689 0.61 -2.9 695,375 - Dshi_0689 0.61 -0.9 695,375 - Dshi_0689 0.61 -0.6 695,377 + Dshi_0689 0.62 -2.2 695,435 - Dshi_0689 0.68 +0.0 695,458 - Dshi_0689 0.71 +3.0 695,492 - Dshi_0689 0.75 -1.3 695,545 - Dshi_0689 0.81 -0.7 695,566 + Dshi_0689 0.83 +5.5 695,568 + Dshi_0689 0.83 -0.6 695,593 + Dshi_0689 0.86 +0.4 695,767 + +3.1 695,775 - Dshi_0690 0.11 +1.0 695,775 - Dshi_0690 0.11 -3.2 695,793 + Dshi_0690 0.14 +0.9
Or see this region's nucleotide sequence