Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0647 and Dshi_0648 are separated by 149 nucleotides Dshi_0648 and Dshi_0649 are separated by 16 nucleotides Dshi_0649 and Dshi_0650 are separated by 19 nucleotides
Dshi_0647: Dshi_0647 - hypothetical protein (RefSeq), at 647,766 to 650,513
_0647
Dshi_0648: Dshi_0648 - recombination protein RecR (RefSeq), at 650,663 to 651,262
_0648
Dshi_0649: Dshi_0649 - hypothetical protein (RefSeq), at 651,279 to 651,623
_0649
Dshi_0650: Dshi_0650 - DNA polymerase III, subunits gamma and tau (RefSeq), at 651,643 to 653,406
_0650
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 649.769 kb on + strand, within Dshi_0647 at 649.772 kb on - strand, within Dshi_0647 at 649.784 kb on + strand, within Dshi_0647 at 649.800 kb on - strand, within Dshi_0647 at 649.810 kb on - strand, within Dshi_0647 at 650.070 kb on + strand, within Dshi_0647 at 650.079 kb on + strand, within Dshi_0647 at 650.136 kb on + strand, within Dshi_0647 at 650.136 kb on + strand, within Dshi_0647 at 650.322 kb on + strand at 650.322 kb on + strand at 650.348 kb on + strand at 650.437 kb on - strand at 650.480 kb on - strand at 650.485 kb on - strand at 650.559 kb on - strand at 650.628 kb on + strand at 650.645 kb on + strand at 650.755 kb on - strand, within Dshi_0648 at 651.022 kb on - strand, within Dshi_0648 at 651.116 kb on + strand, within Dshi_0648 at 651.128 kb on + strand, within Dshi_0648 at 651.262 kb on + strand at 651.290 kb on + strand at 651.308 kb on + strand at 651.366 kb on - strand, within Dshi_0649 at 651.366 kb on - strand, within Dshi_0649 at 651.444 kb on + strand, within Dshi_0649 at 651.481 kb on + strand, within Dshi_0649 at 651.486 kb on + strand, within Dshi_0649 at 651.489 kb on - strand, within Dshi_0649 at 651.499 kb on - strand, within Dshi_0649 at 651.499 kb on - strand, within Dshi_0649 at 651.518 kb on - strand, within Dshi_0649 at 651.565 kb on + strand, within Dshi_0649 at 651.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 649,769 + Dshi_0647 0.73 +3.1 649,772 - Dshi_0647 0.73 +0.1 649,784 + Dshi_0647 0.73 -2.5 649,800 - Dshi_0647 0.74 +0.1 649,810 - Dshi_0647 0.74 -2.6 650,070 + Dshi_0647 0.84 -0.5 650,079 + Dshi_0647 0.84 +0.3 650,136 + Dshi_0647 0.86 +1.1 650,136 + Dshi_0647 0.86 +0.6 650,322 + -1.1 650,322 + +0.1 650,348 + +4.4 650,437 - -0.3 650,480 - +0.0 650,485 - -1.0 650,559 - +0.4 650,628 + +2.4 650,645 + -1.5 650,755 - Dshi_0648 0.15 -2.0 651,022 - Dshi_0648 0.60 -0.7 651,116 + Dshi_0648 0.76 +2.1 651,128 + Dshi_0648 0.78 -3.0 651,262 + +0.2 651,290 + -2.2 651,308 + +0.4 651,366 - Dshi_0649 0.25 +2.1 651,366 - Dshi_0649 0.25 +1.1 651,444 + Dshi_0649 0.48 +1.1 651,481 + Dshi_0649 0.59 -0.5 651,486 + Dshi_0649 0.60 +1.1 651,489 - Dshi_0649 0.61 +1.5 651,499 - Dshi_0649 0.64 +1.1 651,499 - Dshi_0649 0.64 -1.5 651,518 - Dshi_0649 0.69 -1.3 651,565 + Dshi_0649 0.83 +0.1 651,624 + +1.1
Or see this region's nucleotide sequence