Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0638 and Dshi_0639 overlap by 4 nucleotides Dshi_0639 and Dshi_0640 are separated by 101 nucleotides Dshi_0640 and Dshi_0641 are separated by 4 nucleotides Dshi_0641 and Dshi_0642 are separated by 2 nucleotides
Dshi_0638: Dshi_0638 - ABC transporter related (RefSeq), at 637,586 to 638,542
_0638
Dshi_0639: Dshi_0639 - ABC-2 type transporter (RefSeq), at 638,539 to 639,300
_0639
Dshi_0640: Dshi_0640 - peptidase S49 (RefSeq), at 639,402 to 640,199
_0640
Dshi_0641: Dshi_0641 - hypothetical protein (RefSeq), at 640,204 to 640,374
_0641
Dshi_0642: Dshi_0642 - Na+/Ca+ antiporter, CaCA family (RefSeq), at 640,377 to 641,315
_0642
Position (kb) 639
640
641 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 638.409 kb on - strand, within Dshi_0638 at 638.486 kb on - strand at 638.605 kb on - strand at 638.676 kb on + strand, within Dshi_0639 at 638.722 kb on + strand, within Dshi_0639 at 638.730 kb on - strand, within Dshi_0639 at 638.755 kb on - strand, within Dshi_0639 at 638.814 kb on + strand, within Dshi_0639 at 638.833 kb on + strand, within Dshi_0639 at 638.841 kb on - strand, within Dshi_0639 at 638.919 kb on - strand, within Dshi_0639 at 638.947 kb on + strand, within Dshi_0639 at 638.963 kb on + strand, within Dshi_0639 at 638.968 kb on + strand, within Dshi_0639 at 638.968 kb on + strand, within Dshi_0639 at 638.968 kb on + strand, within Dshi_0639 at 639.098 kb on - strand, within Dshi_0639 at 639.128 kb on + strand, within Dshi_0639 at 639.136 kb on + strand, within Dshi_0639 at 639.144 kb on - strand, within Dshi_0639 at 639.208 kb on + strand, within Dshi_0639 at 639.233 kb on + strand at 639.256 kb on - strand at 639.302 kb on - strand at 639.309 kb on + strand at 639.838 kb on + strand, within Dshi_0640 at 639.887 kb on + strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.895 kb on - strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.974 kb on + strand, within Dshi_0640 at 639.982 kb on - strand, within Dshi_0640 at 639.982 kb on - strand, within Dshi_0640 at 639.989 kb on + strand, within Dshi_0640 at 639.997 kb on - strand, within Dshi_0640 at 639.999 kb on + strand, within Dshi_0640 at 640.009 kb on + strand, within Dshi_0640 at 640.093 kb on + strand, within Dshi_0640 at 640.185 kb on + strand at 640.275 kb on + strand, within Dshi_0641 at 640.377 kb on - strand at 640.524 kb on - strand, within Dshi_0642 at 641.098 kb on + strand, within Dshi_0642
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 638,409 - Dshi_0638 0.86 +0.6 638,486 - +3.1 638,605 - -0.2 638,676 + Dshi_0639 0.18 +1.3 638,722 + Dshi_0639 0.24 -0.5 638,730 - Dshi_0639 0.25 -3.0 638,755 - Dshi_0639 0.28 +1.1 638,814 + Dshi_0639 0.36 -2.0 638,833 + Dshi_0639 0.39 +1.8 638,841 - Dshi_0639 0.40 +0.1 638,919 - Dshi_0639 0.50 +1.1 638,947 + Dshi_0639 0.54 -0.0 638,963 + Dshi_0639 0.56 +0.8 638,968 + Dshi_0639 0.56 -0.6 638,968 + Dshi_0639 0.56 -0.5 638,968 + Dshi_0639 0.56 +2.1 639,098 - Dshi_0639 0.73 -1.6 639,128 + Dshi_0639 0.77 -0.9 639,136 + Dshi_0639 0.78 -1.9 639,144 - Dshi_0639 0.79 -0.6 639,208 + Dshi_0639 0.88 +0.1 639,233 + +3.1 639,256 - +3.7 639,302 - -0.8 639,309 + -1.3 639,838 + Dshi_0640 0.55 -1.7 639,887 + Dshi_0640 0.61 -1.7 639,895 - Dshi_0640 0.62 +0.6 639,895 - Dshi_0640 0.62 -1.3 639,895 - Dshi_0640 0.62 +2.1 639,974 + Dshi_0640 0.72 -0.9 639,974 + Dshi_0640 0.72 -1.5 639,974 + Dshi_0640 0.72 +1.7 639,982 - Dshi_0640 0.73 +1.1 639,982 - Dshi_0640 0.73 -4.5 639,989 + Dshi_0640 0.74 +0.1 639,997 - Dshi_0640 0.75 -0.9 639,999 + Dshi_0640 0.75 -0.9 640,009 + Dshi_0640 0.76 -0.6 640,093 + Dshi_0640 0.87 -1.5 640,185 + -1.0 640,275 + Dshi_0641 0.42 +0.5 640,377 - +2.1 640,524 - Dshi_0642 0.16 +1.8 641,098 + Dshi_0642 0.77 +2.1
Or see this region's nucleotide sequence