Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0586 and Dshi_0587 overlap by 29 nucleotides Dshi_0587 and Dshi_0588 are separated by 77 nucleotides Dshi_0588 and Dshi_0589 overlap by 4 nucleotides
Dshi_0586: Dshi_0586 - permease (RefSeq), at 577,452 to 578,498
_0586
Dshi_0587: Dshi_0587 - putative transcriptional regulator, ArsR family (RefSeq), at 578,470 to 578,814
_0587
Dshi_0588: Dshi_0588 - uracil-DNA glycosylase superfamily (RefSeq), at 578,892 to 579,500
_0588
Dshi_0589: Dshi_0589 - hypothetical protein (RefSeq), at 579,497 to 580,282
_0589
Position (kb) 578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 577.543 kb on + strand at 577.558 kb on - strand, within Dshi_0586 at 577.596 kb on + strand, within Dshi_0586 at 577.615 kb on + strand, within Dshi_0586 at 577.615 kb on + strand, within Dshi_0586 at 577.623 kb on - strand, within Dshi_0586 at 577.644 kb on + strand, within Dshi_0586 at 577.672 kb on - strand, within Dshi_0586 at 577.677 kb on - strand, within Dshi_0586 at 577.709 kb on + strand, within Dshi_0586 at 577.717 kb on - strand, within Dshi_0586 at 577.717 kb on - strand, within Dshi_0586 at 577.717 kb on - strand, within Dshi_0586 at 577.784 kb on - strand, within Dshi_0586 at 577.796 kb on - strand, within Dshi_0586 at 577.869 kb on + strand, within Dshi_0586 at 577.875 kb on + strand, within Dshi_0586 at 577.969 kb on - strand, within Dshi_0586 at 577.974 kb on - strand, within Dshi_0586 at 577.974 kb on - strand, within Dshi_0586 at 578.001 kb on - strand, within Dshi_0586 at 578.073 kb on + strand, within Dshi_0586 at 578.224 kb on - strand, within Dshi_0586 at 578.256 kb on - strand, within Dshi_0586 at 578.324 kb on + strand, within Dshi_0586 at 578.387 kb on + strand, within Dshi_0586 at 578.402 kb on + strand at 578.402 kb on + strand at 578.410 kb on - strand at 578.424 kb on + strand at 578.437 kb on - strand at 578.452 kb on + strand at 578.480 kb on + strand at 578.488 kb on - strand at 578.584 kb on - strand, within Dshi_0587 at 578.628 kb on + strand, within Dshi_0587 at 578.701 kb on - strand, within Dshi_0587 at 578.884 kb on - strand at 579.090 kb on - strand, within Dshi_0588 at 579.109 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.235 kb on + strand, within Dshi_0588 at 579.322 kb on + strand, within Dshi_0588 at 579.418 kb on + strand, within Dshi_0588 at 579.426 kb on - strand, within Dshi_0588 at 579.427 kb on - strand, within Dshi_0588 at 579.488 kb on + strand at 579.488 kb on + strand at 579.488 kb on + strand at 579.522 kb on - strand at 579.633 kb on - strand, within Dshi_0589 at 579.645 kb on + strand, within Dshi_0589 at 579.655 kb on - strand, within Dshi_0589 at 579.675 kb on + strand, within Dshi_0589 at 579.675 kb on + strand, within Dshi_0589 at 579.738 kb on + strand, within Dshi_0589
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 577,543 + -0.6 577,558 - Dshi_0586 0.10 -0.0 577,596 + Dshi_0586 0.14 -0.5 577,615 + Dshi_0586 0.16 +0.2 577,615 + Dshi_0586 0.16 +0.2 577,623 - Dshi_0586 0.16 +0.1 577,644 + Dshi_0586 0.18 +0.3 577,672 - Dshi_0586 0.21 -0.5 577,677 - Dshi_0586 0.21 +1.2 577,709 + Dshi_0586 0.25 +0.0 577,717 - Dshi_0586 0.25 +0.6 577,717 - Dshi_0586 0.25 -0.2 577,717 - Dshi_0586 0.25 -2.4 577,784 - Dshi_0586 0.32 +0.7 577,796 - Dshi_0586 0.33 +1.6 577,869 + Dshi_0586 0.40 +1.0 577,875 + Dshi_0586 0.40 -1.3 577,969 - Dshi_0586 0.49 -0.2 577,974 - Dshi_0586 0.50 -1.6 577,974 - Dshi_0586 0.50 +1.6 578,001 - Dshi_0586 0.52 -2.3 578,073 + Dshi_0586 0.59 -0.6 578,224 - Dshi_0586 0.74 -3.0 578,256 - Dshi_0586 0.77 +0.1 578,324 + Dshi_0586 0.83 -2.1 578,387 + Dshi_0586 0.89 +0.7 578,402 + -3.1 578,402 + -2.3 578,410 - +2.2 578,424 + +3.1 578,437 - +0.5 578,452 + -1.2 578,480 + +0.3 578,488 - +0.3 578,584 - Dshi_0587 0.33 +2.2 578,628 + Dshi_0587 0.46 +1.2 578,701 - Dshi_0587 0.67 -2.5 578,884 - -3.2 579,090 - Dshi_0588 0.33 +2.2 579,109 - Dshi_0588 0.36 +0.2 579,232 - Dshi_0588 0.56 -1.1 579,232 - Dshi_0588 0.56 +2.9 579,232 - Dshi_0588 0.56 +1.2 579,232 - Dshi_0588 0.56 -1.7 579,235 + Dshi_0588 0.56 +2.0 579,322 + Dshi_0588 0.71 +0.4 579,418 + Dshi_0588 0.86 +2.0 579,426 - Dshi_0588 0.88 +1.2 579,427 - Dshi_0588 0.88 +2.4 579,488 + -1.4 579,488 + +2.5 579,488 + +3.2 579,522 - -1.8 579,633 - Dshi_0589 0.17 +5.0 579,645 + Dshi_0589 0.19 +1.2 579,655 - Dshi_0589 0.20 -1.4 579,675 + Dshi_0589 0.23 -2.0 579,675 + Dshi_0589 0.23 -0.8 579,738 + Dshi_0589 0.31 -0.8
Or see this region's nucleotide sequence