Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0530 and Dshi_0531 are separated by 74 nucleotides Dshi_0531 and Dshi_0532 are separated by 223 nucleotides
Dshi_0530: Dshi_0530 - ABC transporter related (RefSeq), at 514,281 to 515,777
_0530
Dshi_0531: Dshi_0531 - ABC sugar transporter, periplasmic ligand binding protein (RefSeq), at 515,852 to 516,841
_0531
Dshi_0532: Dshi_0532 - transcriptional regulator, DeoR family (RefSeq), at 517,065 to 518,039
_0532
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 514.978 kb on + strand, within Dshi_0530 at 514.992 kb on - strand, within Dshi_0530 at 514.996 kb on - strand, within Dshi_0530 at 515.047 kb on - strand, within Dshi_0530 at 515.047 kb on - strand, within Dshi_0530 at 515.076 kb on + strand, within Dshi_0530 at 515.125 kb on + strand, within Dshi_0530 at 515.125 kb on + strand, within Dshi_0530 at 515.170 kb on - strand, within Dshi_0530 at 515.272 kb on + strand, within Dshi_0530 at 515.325 kb on - strand, within Dshi_0530 at 515.474 kb on - strand, within Dshi_0530 at 515.554 kb on - strand, within Dshi_0530 at 515.599 kb on + strand, within Dshi_0530 at 515.607 kb on - strand, within Dshi_0530 at 515.617 kb on + strand, within Dshi_0530 at 515.620 kb on - strand, within Dshi_0530 at 515.654 kb on + strand at 515.694 kb on - strand at 515.700 kb on + strand at 515.714 kb on + strand at 515.719 kb on + strand at 515.760 kb on + strand at 515.760 kb on + strand at 515.768 kb on - strand at 515.768 kb on - strand at 515.768 kb on - strand at 515.811 kb on + strand at 515.819 kb on - strand at 515.840 kb on - strand at 515.944 kb on - strand at 515.974 kb on + strand, within Dshi_0531 at 516.003 kb on + strand, within Dshi_0531 at 516.029 kb on + strand, within Dshi_0531 at 516.119 kb on + strand, within Dshi_0531 at 516.234 kb on + strand, within Dshi_0531 at 516.242 kb on - strand, within Dshi_0531 at 516.262 kb on - strand, within Dshi_0531 at 516.325 kb on + strand, within Dshi_0531 at 516.345 kb on + strand, within Dshi_0531 at 516.396 kb on + strand, within Dshi_0531 at 516.527 kb on + strand, within Dshi_0531 at 516.535 kb on - strand, within Dshi_0531 at 516.585 kb on - strand, within Dshi_0531 at 516.593 kb on - strand, within Dshi_0531 at 516.649 kb on + strand, within Dshi_0531 at 516.750 kb on + strand at 516.776 kb on - strand at 516.776 kb on - strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.823 kb on - strand at 516.848 kb on - strand at 516.899 kb on - strand at 516.946 kb on - strand at 516.951 kb on + strand at 516.951 kb on - strand at 517.069 kb on - strand at 517.089 kb on + strand at 517.141 kb on + strand at 517.175 kb on + strand, within Dshi_0532 at 517.210 kb on + strand, within Dshi_0532 at 517.218 kb on - strand, within Dshi_0532 at 517.282 kb on - strand, within Dshi_0532 at 517.595 kb on - strand, within Dshi_0532 at 517.650 kb on + strand, within Dshi_0532 at 517.695 kb on + strand, within Dshi_0532 at 517.703 kb on - strand, within Dshi_0532 at 517.713 kb on - strand, within Dshi_0532 at 517.736 kb on + strand, within Dshi_0532 at 517.751 kb on + strand, within Dshi_0532 at 517.812 kb on - strand, within Dshi_0532 at 517.824 kb on + strand, within Dshi_0532
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 514,978 + Dshi_0530 0.47 -0.9 514,992 - Dshi_0530 0.47 +1.0 514,996 - Dshi_0530 0.48 -0.5 515,047 - Dshi_0530 0.51 +2.8 515,047 - Dshi_0530 0.51 +1.1 515,076 + Dshi_0530 0.53 -1.9 515,125 + Dshi_0530 0.56 +1.2 515,125 + Dshi_0530 0.56 -1.1 515,170 - Dshi_0530 0.59 -1.9 515,272 + Dshi_0530 0.66 -1.5 515,325 - Dshi_0530 0.70 -1.6 515,474 - Dshi_0530 0.80 -1.1 515,554 - Dshi_0530 0.85 -1.3 515,599 + Dshi_0530 0.88 +0.9 515,607 - Dshi_0530 0.89 -1.7 515,617 + Dshi_0530 0.89 -2.3 515,620 - Dshi_0530 0.89 -1.4 515,654 + -0.5 515,694 - +2.1 515,700 + +1.4 515,714 + -1.6 515,719 + -2.7 515,760 + -0.4 515,760 + -1.7 515,768 - -0.2 515,768 - -1.0 515,768 - -1.3 515,811 + +1.1 515,819 - -0.4 515,840 - -0.3 515,944 - -2.9 515,974 + Dshi_0531 0.12 -0.3 516,003 + Dshi_0531 0.15 -0.2 516,029 + Dshi_0531 0.18 +0.3 516,119 + Dshi_0531 0.27 -1.2 516,234 + Dshi_0531 0.39 -0.9 516,242 - Dshi_0531 0.39 +1.3 516,262 - Dshi_0531 0.41 -0.2 516,325 + Dshi_0531 0.48 -0.3 516,345 + Dshi_0531 0.50 -0.3 516,396 + Dshi_0531 0.55 -2.6 516,527 + Dshi_0531 0.68 -2.0 516,535 - Dshi_0531 0.69 -1.2 516,585 - Dshi_0531 0.74 -0.5 516,593 - Dshi_0531 0.75 -0.3 516,649 + Dshi_0531 0.81 +1.5 516,750 + -3.4 516,776 - -0.1 516,776 - +0.0 516,815 + -2.6 516,815 + -0.1 516,815 + -0.4 516,823 - +2.5 516,848 - -0.3 516,899 - +1.1 516,946 - -0.7 516,951 + +0.3 516,951 - -1.8 517,069 - -0.3 517,089 + -1.1 517,141 + -0.2 517,175 + Dshi_0532 0.11 +0.3 517,210 + Dshi_0532 0.15 +0.5 517,218 - Dshi_0532 0.16 -0.3 517,282 - Dshi_0532 0.22 -0.7 517,595 - Dshi_0532 0.54 -0.0 517,650 + Dshi_0532 0.60 -0.3 517,695 + Dshi_0532 0.65 +0.4 517,703 - Dshi_0532 0.65 -0.2 517,713 - Dshi_0532 0.66 +0.4 517,736 + Dshi_0532 0.69 +0.2 517,751 + Dshi_0532 0.70 -0.1 517,812 - Dshi_0532 0.77 +0.2 517,824 + Dshi_0532 0.78 +1.5
Or see this region's nucleotide sequence