Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0524

Experiment: Anaero. nitrate (e.a.), marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0522 and Dshi_0523 overlap by 4 nucleotidesDshi_0523 and Dshi_0524 overlap by 4 nucleotidesDshi_0524 and Dshi_0525 are separated by 83 nucleotidesDshi_0525 and Dshi_0526 are separated by 27 nucleotides Dshi_0522: Dshi_0522 - transcriptional regulator, DeoR family (RefSeq), at 507,247 to 508,206 _0522 Dshi_0523: Dshi_0523 - L-fuculose-phosphate aldolase (RefSeq), at 508,203 to 508,898 _0523 Dshi_0524: Dshi_0524 - aldo/keto reductase (RefSeq), at 508,895 to 509,974 _0524 Dshi_0525: Dshi_0525 - hypothetical protein (RefSeq), at 510,058 to 510,609 _0525 Dshi_0526: Dshi_0526 - Dak phosphatase (RefSeq), at 510,637 to 511,236 _0526 Position (kb) 508 509 510Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 507.896 kb on - strand, within Dshi_0522at 507.931 kb on + strand, within Dshi_0522at 508.006 kb on - strand, within Dshi_0522at 508.049 kb on - strand, within Dshi_0522at 508.052 kb on + strand, within Dshi_0522at 508.094 kb on + strand, within Dshi_0522at 508.094 kb on + strand, within Dshi_0522at 508.170 kb on - strandat 508.218 kb on - strandat 508.218 kb on - strandat 508.258 kb on + strandat 508.273 kb on - strand, within Dshi_0523at 508.292 kb on - strand, within Dshi_0523at 508.338 kb on - strand, within Dshi_0523at 508.343 kb on - strand, within Dshi_0523at 508.356 kb on - strand, within Dshi_0523at 508.361 kb on - strand, within Dshi_0523at 508.426 kb on - strand, within Dshi_0523at 508.433 kb on + strand, within Dshi_0523at 508.446 kb on - strand, within Dshi_0523at 508.484 kb on - strand, within Dshi_0523at 508.514 kb on - strand, within Dshi_0523at 508.541 kb on - strand, within Dshi_0523at 508.556 kb on - strand, within Dshi_0523at 508.562 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.624 kb on + strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.632 kb on - strand, within Dshi_0523at 508.745 kb on + strand, within Dshi_0523at 508.761 kb on - strand, within Dshi_0523at 508.770 kb on - strand, within Dshi_0523at 508.788 kb on - strand, within Dshi_0523at 508.788 kb on - strand, within Dshi_0523at 508.789 kb on - strand, within Dshi_0523at 508.802 kb on - strand, within Dshi_0523at 508.857 kb on + strandat 508.877 kb on - strandat 508.951 kb on + strandat 508.999 kb on + strandat 509.000 kb on + strandat 509.003 kb on - strand, within Dshi_0524at 509.003 kb on - strand, within Dshi_0524at 509.007 kb on - strand, within Dshi_0524at 509.029 kb on + strand, within Dshi_0524at 509.029 kb on - strand, within Dshi_0524at 509.029 kb on - strand, within Dshi_0524at 509.074 kb on + strand, within Dshi_0524at 509.082 kb on - strand, within Dshi_0524at 509.138 kb on + strand, within Dshi_0524at 509.145 kb on + strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.153 kb on - strand, within Dshi_0524at 509.170 kb on - strand, within Dshi_0524at 509.182 kb on - strandat 509.229 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.239 kb on + strand, within Dshi_0524at 509.247 kb on - strand, within Dshi_0524at 509.286 kb on + strand, within Dshi_0524at 509.286 kb on + strand, within Dshi_0524at 509.352 kb on + strand, within Dshi_0524at 509.361 kb on + strand, within Dshi_0524at 509.410 kb on + strand, within Dshi_0524at 509.499 kb on + strand, within Dshi_0524at 509.514 kb on - strand, within Dshi_0524at 509.576 kb on - strand, within Dshi_0524at 509.691 kb on + strand, within Dshi_0524at 509.696 kb on + strand, within Dshi_0524at 509.860 kb on - strand, within Dshi_0524at 509.876 kb on + strandat 509.897 kb on + strandat 509.912 kb on + strandat 509.963 kb on + strandat 509.976 kb on - strandat 509.976 kb on - strandat 509.977 kb on + strandat 510.029 kb on - strandat 510.120 kb on - strand, within Dshi_0525at 510.168 kb on + strand, within Dshi_0525at 510.186 kb on + strand, within Dshi_0525at 510.192 kb on + strand, within Dshi_0525at 510.192 kb on + strand, within Dshi_0525at 510.192 kb on + strand, within Dshi_0525at 510.202 kb on + strand, within Dshi_0525at 510.210 kb on - strand, within Dshi_0525at 510.219 kb on - strand, within Dshi_0525at 510.280 kb on - strand, within Dshi_0525at 510.280 kb on - strand, within Dshi_0525at 510.339 kb on + strand, within Dshi_0525at 510.571 kb on + strandat 510.579 kb on - strandat 510.611 kb on - strandat 510.628 kb on + strandat 510.656 kb on - strandat 510.689 kb on - strandat 510.772 kb on + strand, within Dshi_0526at 510.780 kb on - strand, within Dshi_0526at 510.786 kb on + strand, within Dshi_0526at 510.787 kb on - strand, within Dshi_0526at 510.796 kb on + strand, within Dshi_0526at 510.796 kb on + strand, within Dshi_0526at 510.799 kb on - strand, within Dshi_0526at 510.844 kb on + strand, within Dshi_0526at 510.867 kb on + strand, within Dshi_0526at 510.885 kb on - strand, within Dshi_0526at 510.905 kb on + strand, within Dshi_0526at 510.905 kb on + strand, within Dshi_0526at 510.920 kb on + strand, within Dshi_0526

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
remove
507,896 - Dshi_0522 0.68 -0.3
507,931 + Dshi_0522 0.71 +0.3
508,006 - Dshi_0522 0.79 +0.9
508,049 - Dshi_0522 0.84 +2.0
508,052 + Dshi_0522 0.84 +1.1
508,094 + Dshi_0522 0.88 +0.7
508,094 + Dshi_0522 0.88 -0.2
508,170 - +0.8
508,218 - -0.3
508,218 - +0.3
508,258 + -3.3
508,273 - Dshi_0523 0.10 +1.5
508,292 - Dshi_0523 0.13 +0.0
508,338 - Dshi_0523 0.19 -0.6
508,343 - Dshi_0523 0.20 -1.4
508,356 - Dshi_0523 0.22 -0.8
508,361 - Dshi_0523 0.23 +0.4
508,426 - Dshi_0523 0.32 +1.2
508,433 + Dshi_0523 0.33 -0.6
508,446 - Dshi_0523 0.35 +3.1
508,484 - Dshi_0523 0.40 -0.1
508,514 - Dshi_0523 0.45 -0.5
508,541 - Dshi_0523 0.49 +0.0
508,556 - Dshi_0523 0.51 -0.7
508,562 + Dshi_0523 0.52 -0.2
508,624 + Dshi_0523 0.60 +2.2
508,624 + Dshi_0523 0.60 +0.1
508,624 + Dshi_0523 0.60 -0.6
508,624 + Dshi_0523 0.60 -0.0
508,624 + Dshi_0523 0.60 -0.1
508,624 + Dshi_0523 0.60 -3.8
508,624 + Dshi_0523 0.60 +0.0
508,624 + Dshi_0523 0.60 -0.9
508,624 + Dshi_0523 0.60 -0.8
508,632 - Dshi_0523 0.62 +0.4
508,632 - Dshi_0523 0.62 +0.4
508,632 - Dshi_0523 0.62 +0.1
508,632 - Dshi_0523 0.62 -0.7
508,632 - Dshi_0523 0.62 -1.1
508,632 - Dshi_0523 0.62 -0.8
508,632 - Dshi_0523 0.62 -0.2
508,632 - Dshi_0523 0.62 +0.2
508,632 - Dshi_0523 0.62 +0.8
508,632 - Dshi_0523 0.62 +0.0
508,632 - Dshi_0523 0.62 +0.4
508,632 - Dshi_0523 0.62 -1.7
508,632 - Dshi_0523 0.62 -0.6
508,632 - Dshi_0523 0.62 +0.8
508,632 - Dshi_0523 0.62 -0.5
508,632 - Dshi_0523 0.62 -1.1
508,632 - Dshi_0523 0.62 +0.3
508,745 + Dshi_0523 0.78 +0.4
508,761 - Dshi_0523 0.80 -0.5
508,770 - Dshi_0523 0.81 -0.2
508,788 - Dshi_0523 0.84 +0.4
508,788 - Dshi_0523 0.84 -0.5
508,789 - Dshi_0523 0.84 -0.1
508,802 - Dshi_0523 0.86 +0.9
508,857 + -0.2
508,877 - -0.8
508,951 + -0.5
508,999 + -3.3
509,000 + +0.0
509,003 - Dshi_0524 0.10 +2.1
509,003 - Dshi_0524 0.10 -1.4
509,007 - Dshi_0524 0.10 -0.2
509,029 + Dshi_0524 0.12 +3.8
509,029 - Dshi_0524 0.12 -0.6
509,029 - Dshi_0524 0.12 +0.2
509,074 + Dshi_0524 0.17 -0.2
509,082 - Dshi_0524 0.17 -2.3
509,138 + Dshi_0524 0.23 +0.0
509,145 + Dshi_0524 0.23 +1.6
509,153 - Dshi_0524 0.24 +0.3
509,153 - Dshi_0524 0.24 +0.4
509,153 - Dshi_0524 0.24 -1.1
509,170 - Dshi_0524 0.25 +0.3
509,182 - +1.3
509,229 + Dshi_0524 0.31 +0.1
509,239 + Dshi_0524 0.32 +0.7
509,239 + Dshi_0524 0.32 +1.3
509,239 + Dshi_0524 0.32 +3.1
509,247 - Dshi_0524 0.33 +0.1
509,286 + Dshi_0524 0.36 +0.8
509,286 + Dshi_0524 0.36 -0.8
509,352 + Dshi_0524 0.42 +0.6
509,361 + Dshi_0524 0.43 +1.4
509,410 + Dshi_0524 0.48 -3.1
509,499 + Dshi_0524 0.56 -0.1
509,514 - Dshi_0524 0.57 -1.0
509,576 - Dshi_0524 0.63 +1.9
509,691 + Dshi_0524 0.74 -3.9
509,696 + Dshi_0524 0.74 -1.7
509,860 - Dshi_0524 0.89 +0.2
509,876 + +2.1
509,897 + -2.6
509,912 + -0.8
509,963 + -2.3
509,976 - +2.8
509,976 - +0.7
509,977 + +0.1
510,029 - +0.3
510,120 - Dshi_0525 0.11 -0.8
510,168 + Dshi_0525 0.20 -1.2
510,186 + Dshi_0525 0.23 -0.6
510,192 + Dshi_0525 0.24 -0.3
510,192 + Dshi_0525 0.24 -1.3
510,192 + Dshi_0525 0.24 -3.8
510,202 + Dshi_0525 0.26 +1.3
510,210 - Dshi_0525 0.28 +0.5
510,219 - Dshi_0525 0.29 -1.1
510,280 - Dshi_0525 0.40 -1.6
510,280 - Dshi_0525 0.40 +2.8
510,339 + Dshi_0525 0.51 +0.6
510,571 + -1.2
510,579 - +3.6
510,611 - +0.7
510,628 + -0.1
510,656 - +0.3
510,689 - +3.6
510,772 + Dshi_0526 0.23 +0.1
510,780 - Dshi_0526 0.24 -1.0
510,786 + Dshi_0526 0.25 +0.7
510,787 - Dshi_0526 0.25 -0.2
510,796 + Dshi_0526 0.27 -1.0
510,796 + Dshi_0526 0.27 -0.9
510,799 - Dshi_0526 0.27 -1.7
510,844 + Dshi_0526 0.34 +2.3
510,867 + Dshi_0526 0.38 +1.1
510,885 - Dshi_0526 0.41 +0.3
510,905 + Dshi_0526 0.45 -1.1
510,905 + Dshi_0526 0.45 -1.2
510,920 + Dshi_0526 0.47 -4.3

Or see this region's nucleotide sequence