Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0479

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0477 and Dshi_0478 overlap by 17 nucleotidesDshi_0478 and Dshi_0479 overlap by 4 nucleotidesDshi_0479 and Dshi_0480 are separated by 134 nucleotides Dshi_0477: Dshi_0477 - hypothetical protein (RefSeq), at 462,744 to 463,289 _0477 Dshi_0478: Dshi_0478 - extracellular solute-binding protein family 3 (RefSeq), at 463,273 to 464,121 _0478 Dshi_0479: Dshi_0479 - hypothetical protein (RefSeq), at 464,118 to 464,666 _0479 Dshi_0480: Dshi_0480 - hypothetical protein (RefSeq), at 464,801 to 465,967 _0480 Position (kb) 464 465Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 463.173 kb on - strand, within Dshi_0477at 463.194 kb on - strand, within Dshi_0477at 463.207 kb on + strand, within Dshi_0477at 463.210 kb on + strand, within Dshi_0477at 463.259 kb on - strandat 463.287 kb on - strandat 463.301 kb on + strandat 463.321 kb on - strandat 463.354 kb on + strandat 463.361 kb on + strand, within Dshi_0478at 463.361 kb on + strand, within Dshi_0478at 463.369 kb on - strand, within Dshi_0478at 463.369 kb on - strand, within Dshi_0478at 463.391 kb on - strand, within Dshi_0478at 463.392 kb on + strand, within Dshi_0478at 463.395 kb on - strand, within Dshi_0478at 463.395 kb on - strand, within Dshi_0478at 463.400 kb on - strand, within Dshi_0478at 463.421 kb on + strand, within Dshi_0478at 463.462 kb on - strand, within Dshi_0478at 463.492 kb on + strand, within Dshi_0478at 463.492 kb on + strand, within Dshi_0478at 463.492 kb on + strand, within Dshi_0478at 463.502 kb on + strand, within Dshi_0478at 463.508 kb on + strand, within Dshi_0478at 463.512 kb on - strand, within Dshi_0478at 463.515 kb on + strand, within Dshi_0478at 463.516 kb on + strand, within Dshi_0478at 463.516 kb on + strand, within Dshi_0478at 463.516 kb on + strand, within Dshi_0478at 463.522 kb on + strand, within Dshi_0478at 463.522 kb on + strand, within Dshi_0478at 463.523 kb on + strand, within Dshi_0478at 463.524 kb on - strand, within Dshi_0478at 463.524 kb on - strand, within Dshi_0478at 463.524 kb on - strand, within Dshi_0478at 463.539 kb on + strand, within Dshi_0478at 463.561 kb on + strand, within Dshi_0478at 463.571 kb on + strand, within Dshi_0478at 463.571 kb on + strand, within Dshi_0478at 463.571 kb on + strand, within Dshi_0478at 463.571 kb on + strand, within Dshi_0478at 463.574 kb on + strand, within Dshi_0478at 463.576 kb on + strand, within Dshi_0478at 463.576 kb on + strand, within Dshi_0478at 463.576 kb on + strand, within Dshi_0478at 463.576 kb on + strand, within Dshi_0478at 463.579 kb on - strand, within Dshi_0478at 463.579 kb on - strand, within Dshi_0478at 463.579 kb on - strand, within Dshi_0478at 463.582 kb on - strand, within Dshi_0478at 463.583 kb on + strand, within Dshi_0478at 463.583 kb on + strand, within Dshi_0478at 463.583 kb on + strand, within Dshi_0478at 463.584 kb on - strand, within Dshi_0478at 463.591 kb on - strand, within Dshi_0478at 463.591 kb on - strand, within Dshi_0478at 463.591 kb on - strand, within Dshi_0478at 463.596 kb on + strand, within Dshi_0478at 463.613 kb on + strand, within Dshi_0478at 463.631 kb on + strand, within Dshi_0478at 463.654 kb on + strand, within Dshi_0478at 463.664 kb on + strand, within Dshi_0478at 463.672 kb on - strand, within Dshi_0478at 463.672 kb on - strand, within Dshi_0478at 463.724 kb on + strand, within Dshi_0478at 463.728 kb on + strand, within Dshi_0478at 463.729 kb on + strand, within Dshi_0478at 463.757 kb on - strand, within Dshi_0478at 463.774 kb on + strand, within Dshi_0478at 463.775 kb on - strand, within Dshi_0478at 463.784 kb on - strand, within Dshi_0478at 463.802 kb on + strand, within Dshi_0478at 463.831 kb on + strand, within Dshi_0478at 463.856 kb on - strand, within Dshi_0478at 463.919 kb on - strand, within Dshi_0478at 463.920 kb on + strand, within Dshi_0478at 463.936 kb on - strand, within Dshi_0478at 463.937 kb on + strand, within Dshi_0478at 463.941 kb on - strand, within Dshi_0478at 463.970 kb on + strand, within Dshi_0478at 463.978 kb on - strand, within Dshi_0478at 463.978 kb on - strand, within Dshi_0478at 463.996 kb on - strand, within Dshi_0478at 464.076 kb on + strandat 464.077 kb on - strandat 464.172 kb on - strandat 464.219 kb on + strand, within Dshi_0479at 464.224 kb on + strand, within Dshi_0479at 464.230 kb on + strand, within Dshi_0479at 464.230 kb on + strand, within Dshi_0479at 464.236 kb on + strand, within Dshi_0479at 464.247 kb on + strand, within Dshi_0479at 464.255 kb on + strandat 464.265 kb on + strand, within Dshi_0479at 464.319 kb on + strand, within Dshi_0479at 464.352 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.353 kb on - strand, within Dshi_0479at 464.374 kb on + strand, within Dshi_0479at 464.408 kb on + strand, within Dshi_0479at 464.413 kb on + strand, within Dshi_0479at 464.465 kb on + strand, within Dshi_0479at 464.524 kb on - strand, within Dshi_0479at 464.552 kb on + strand, within Dshi_0479at 464.552 kb on + strand, within Dshi_0479at 464.552 kb on + strand, within Dshi_0479at 464.552 kb on + strand, within Dshi_0479at 464.558 kb on + strand, within Dshi_0479at 464.558 kb on + strand, within Dshi_0479at 464.558 kb on + strandat 464.558 kb on + strand, within Dshi_0479at 464.566 kb on - strand, within Dshi_0479at 464.566 kb on - strand, within Dshi_0479at 464.583 kb on + strand, within Dshi_0479at 464.596 kb on - strand, within Dshi_0479at 464.598 kb on + strand, within Dshi_0479at 464.635 kb on + strandat 464.635 kb on + strandat 464.643 kb on - strandat 464.765 kb on - strandat 464.876 kb on + strandat 464.903 kb on - strandat 464.908 kb on - strandat 464.917 kb on + strandat 464.969 kb on + strand, within Dshi_0480at 464.977 kb on - strand, within Dshi_0480at 465.009 kb on - strand, within Dshi_0480at 465.012 kb on + strand, within Dshi_0480at 465.024 kb on - strand, within Dshi_0480at 465.034 kb on + strand, within Dshi_0480at 465.042 kb on + strand, within Dshi_0480at 465.070 kb on - strand, within Dshi_0480at 465.082 kb on + strand, within Dshi_0480at 465.099 kb on - strand, within Dshi_0480at 465.100 kb on - strand, within Dshi_0480at 465.123 kb on - strand, within Dshi_0480at 465.194 kb on + strand, within Dshi_0480at 465.195 kb on + strand, within Dshi_0480at 465.217 kb on + strand, within Dshi_0480at 465.217 kb on + strand, within Dshi_0480at 465.253 kb on - strand, within Dshi_0480at 465.265 kb on + strand, within Dshi_0480at 465.272 kb on - strand, within Dshi_0480at 465.276 kb on + strand, within Dshi_0480at 465.341 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.376 kb on + strand, within Dshi_0480at 465.416 kb on - strand, within Dshi_0480at 465.416 kb on - strand, within Dshi_0480at 465.484 kb on + strand, within Dshi_0480at 465.509 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.519 kb on + strand, within Dshi_0480at 465.521 kb on - strand, within Dshi_0480at 465.524 kb on + strand, within Dshi_0480at 465.524 kb on + strand, within Dshi_0480at 465.527 kb on - strand, within Dshi_0480at 465.527 kb on - strand, within Dshi_0480at 465.536 kb on + strand, within Dshi_0480at 465.601 kb on + strand, within Dshi_0480at 465.623 kb on - strand, within Dshi_0480

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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463,173 - Dshi_0477 0.79 +4.4
463,194 - Dshi_0477 0.82 +0.9
463,207 + Dshi_0477 0.85 -2.5
463,210 + Dshi_0477 0.85 -1.6
463,259 - -2.7
463,287 - -0.0
463,301 + +0.3
463,321 - +2.2
463,354 + -0.2
463,361 + Dshi_0478 0.10 -0.9
463,361 + Dshi_0478 0.10 -4.3
463,369 - Dshi_0478 0.11 +0.9
463,369 - Dshi_0478 0.11 +0.3
463,391 - Dshi_0478 0.14 +0.3
463,392 + Dshi_0478 0.14 -0.3
463,395 - Dshi_0478 0.14 -1.3
463,395 - Dshi_0478 0.14 +0.3
463,400 - Dshi_0478 0.15 +0.6
463,421 + Dshi_0478 0.17 -0.8
463,462 - Dshi_0478 0.22 +2.0
463,492 + Dshi_0478 0.26 -1.9
463,492 + Dshi_0478 0.26 -0.3
463,492 + Dshi_0478 0.26 -0.2
463,502 + Dshi_0478 0.27 +0.3
463,508 + Dshi_0478 0.28 +0.5
463,512 - Dshi_0478 0.28 -0.7
463,515 + Dshi_0478 0.29 +3.1
463,516 + Dshi_0478 0.29 +0.7
463,516 + Dshi_0478 0.29 -1.4
463,516 + Dshi_0478 0.29 -0.2
463,522 + Dshi_0478 0.29 -0.4
463,522 + Dshi_0478 0.29 +0.6
463,523 + Dshi_0478 0.29 -0.9
463,524 - Dshi_0478 0.30 +2.5
463,524 - Dshi_0478 0.30 -0.7
463,524 - Dshi_0478 0.30 +0.9
463,539 + Dshi_0478 0.31 +0.2
463,561 + Dshi_0478 0.34 +0.1
463,571 + Dshi_0478 0.35 +0.8
463,571 + Dshi_0478 0.35 +4.5
463,571 + Dshi_0478 0.35 +1.5
463,571 + Dshi_0478 0.35 -2.7
463,574 + Dshi_0478 0.35 -0.1
463,576 + Dshi_0478 0.36 -0.5
463,576 + Dshi_0478 0.36 +0.5
463,576 + Dshi_0478 0.36 -1.1
463,576 + Dshi_0478 0.36 -1.2
463,579 - Dshi_0478 0.36 -2.8
463,579 - Dshi_0478 0.36 +0.1
463,579 - Dshi_0478 0.36 +0.4
463,582 - Dshi_0478 0.36 -1.6
463,583 + Dshi_0478 0.37 -1.0
463,583 + Dshi_0478 0.37 -1.8
463,583 + Dshi_0478 0.37 +3.0
463,584 - Dshi_0478 0.37 +0.1
463,591 - Dshi_0478 0.37 -1.4
463,591 - Dshi_0478 0.37 +1.3
463,591 - Dshi_0478 0.37 +0.9
463,596 + Dshi_0478 0.38 -0.6
463,613 + Dshi_0478 0.40 -1.9
463,631 + Dshi_0478 0.42 -0.8
463,654 + Dshi_0478 0.45 +0.0
463,664 + Dshi_0478 0.46 -1.6
463,672 - Dshi_0478 0.47 -1.3
463,672 - Dshi_0478 0.47 +0.5
463,724 + Dshi_0478 0.53 +0.1
463,728 + Dshi_0478 0.54 -0.5
463,729 + Dshi_0478 0.54 +1.5
463,757 - Dshi_0478 0.57 -1.6
463,774 + Dshi_0478 0.59 +0.1
463,775 - Dshi_0478 0.59 +0.6
463,784 - Dshi_0478 0.60 +1.0
463,802 + Dshi_0478 0.62 +1.1
463,831 + Dshi_0478 0.66 -0.7
463,856 - Dshi_0478 0.69 -2.7
463,919 - Dshi_0478 0.76 +2.2
463,920 + Dshi_0478 0.76 +0.6
463,936 - Dshi_0478 0.78 +0.3
463,937 + Dshi_0478 0.78 -0.7
463,941 - Dshi_0478 0.79 +0.1
463,970 + Dshi_0478 0.82 -1.7
463,978 - Dshi_0478 0.83 -0.6
463,978 - Dshi_0478 0.83 +0.2
463,996 - Dshi_0478 0.85 +0.1
464,076 + +2.1
464,077 - -0.1
464,172 - +1.2
464,219 + Dshi_0479 0.18 +0.4
464,224 + Dshi_0479 0.19 -1.3
464,230 + Dshi_0479 0.20 +0.1
464,230 + Dshi_0479 0.20 +0.4
464,236 + Dshi_0479 0.21 -1.6
464,247 + Dshi_0479 0.23 +0.8
464,255 + +1.2
464,265 + Dshi_0479 0.27 +0.8
464,319 + Dshi_0479 0.37 +0.0
464,352 - Dshi_0479 0.43 -1.9
464,353 - Dshi_0479 0.43 +1.7
464,353 - Dshi_0479 0.43 -0.3
464,353 - Dshi_0479 0.43 +0.3
464,353 - Dshi_0479 0.43 +0.3
464,353 - Dshi_0479 0.43 +0.6
464,353 - Dshi_0479 0.43 -1.7
464,374 + Dshi_0479 0.47 +0.2
464,408 + Dshi_0479 0.53 -0.7
464,413 + Dshi_0479 0.54 -1.4
464,465 + Dshi_0479 0.63 +0.7
464,524 - Dshi_0479 0.74 -0.9
464,552 + Dshi_0479 0.79 +2.4
464,552 + Dshi_0479 0.79 +0.7
464,552 + Dshi_0479 0.79 -0.7
464,552 + Dshi_0479 0.79 -1.8
464,558 + Dshi_0479 0.80 -1.3
464,558 + Dshi_0479 0.80 -2.5
464,558 + +0.2
464,558 + Dshi_0479 0.80 -0.5
464,566 - Dshi_0479 0.82 -1.1
464,566 - Dshi_0479 0.82 -2.9
464,583 + Dshi_0479 0.85 +0.5
464,596 - Dshi_0479 0.87 -3.2
464,598 + Dshi_0479 0.87 -0.8
464,635 + +1.1
464,635 + -0.2
464,643 - +0.4
464,765 - +0.4
464,876 + -0.1
464,903 - -0.6
464,908 - +1.2
464,917 + -2.6
464,969 + Dshi_0480 0.14 -0.7
464,977 - Dshi_0480 0.15 -0.0
465,009 - Dshi_0480 0.18 -0.8
465,012 + Dshi_0480 0.18 +4.6
465,024 - Dshi_0480 0.19 +3.8
465,034 + Dshi_0480 0.20 +0.1
465,042 + Dshi_0480 0.21 +1.0
465,070 - Dshi_0480 0.23 -3.2
465,082 + Dshi_0480 0.24 -2.6
465,099 - Dshi_0480 0.26 +0.4
465,100 - Dshi_0480 0.26 -0.5
465,123 - Dshi_0480 0.28 -0.7
465,194 + Dshi_0480 0.34 +0.4
465,195 + Dshi_0480 0.34 -0.4
465,217 + Dshi_0480 0.36 +0.1
465,217 + Dshi_0480 0.36 -0.3
465,253 - Dshi_0480 0.39 +1.2
465,265 + Dshi_0480 0.40 -3.1
465,272 - Dshi_0480 0.40 +2.4
465,276 + Dshi_0480 0.41 -0.2
465,341 + Dshi_0480 0.46 +0.8
465,376 + Dshi_0480 0.49 -0.4
465,376 + Dshi_0480 0.49 +0.2
465,376 + Dshi_0480 0.49 +1.0
465,416 - Dshi_0480 0.53 -0.1
465,416 - Dshi_0480 0.53 +0.1
465,484 + Dshi_0480 0.59 +1.4
465,509 + Dshi_0480 0.61 +1.0
465,519 + Dshi_0480 0.62 -0.4
465,519 + Dshi_0480 0.62 -3.3
465,519 + Dshi_0480 0.62 +0.4
465,519 + Dshi_0480 0.62 -0.1
465,521 - Dshi_0480 0.62 -0.7
465,524 + Dshi_0480 0.62 +0.4
465,524 + Dshi_0480 0.62 -2.8
465,527 - Dshi_0480 0.62 -0.1
465,527 - Dshi_0480 0.62 +0.4
465,536 + Dshi_0480 0.63 -2.2
465,601 + Dshi_0480 0.69 -0.2
465,623 - Dshi_0480 0.70 -0.6

Or see this region's nucleotide sequence