Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0456 and Dshi_0457 overlap by 4 nucleotides Dshi_0457 and Dshi_0458 overlap by 4 nucleotides Dshi_0458 and Dshi_0459 overlap by 8 nucleotides
Dshi_0456: Dshi_0456 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 443,039 to 443,995
_0456
Dshi_0457: Dshi_0457 - protein of unknown function DUF58 (RefSeq), at 443,992 to 444,900
_0457
Dshi_0458: Dshi_0458 - hypothetical protein (RefSeq), at 444,897 to 445,268
_0458
Dshi_0459: Dshi_0459 - von Willebrand factor type A (RefSeq), at 445,261 to 446,223
_0459
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 443.023 kb on + strand at 443.031 kb on - strand at 443.033 kb on + strand at 443.056 kb on - strand at 443.123 kb on - strand at 443.205 kb on - strand, within Dshi_0456 at 443.207 kb on + strand, within Dshi_0456 at 443.256 kb on - strand, within Dshi_0456 at 443.256 kb on - strand, within Dshi_0456 at 443.304 kb on + strand, within Dshi_0456 at 443.311 kb on + strand, within Dshi_0456 at 443.311 kb on + strand, within Dshi_0456 at 443.342 kb on + strand, within Dshi_0456 at 443.352 kb on + strand, within Dshi_0456 at 443.376 kb on + strand, within Dshi_0456 at 443.379 kb on - strand, within Dshi_0456 at 443.421 kb on - strand, within Dshi_0456 at 443.421 kb on - strand, within Dshi_0456 at 443.431 kb on + strand, within Dshi_0456 at 443.432 kb on - strand, within Dshi_0456 at 443.445 kb on - strand, within Dshi_0456 at 443.563 kb on + strand, within Dshi_0456 at 443.578 kb on + strand, within Dshi_0456 at 443.634 kb on - strand, within Dshi_0456 at 443.636 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.639 kb on - strand, within Dshi_0456 at 443.671 kb on - strand, within Dshi_0456 at 443.683 kb on - strand, within Dshi_0456 at 443.685 kb on + strand, within Dshi_0456 at 443.685 kb on + strand, within Dshi_0456 at 443.693 kb on - strand, within Dshi_0456 at 443.721 kb on + strand, within Dshi_0456 at 443.737 kb on + strand, within Dshi_0456 at 443.745 kb on - strand, within Dshi_0456 at 443.772 kb on + strand, within Dshi_0456 at 443.790 kb on + strand, within Dshi_0456 at 443.797 kb on + strand, within Dshi_0456 at 443.801 kb on + strand, within Dshi_0456 at 443.806 kb on + strand, within Dshi_0456 at 443.806 kb on + strand, within Dshi_0456 at 443.812 kb on + strand, within Dshi_0456 at 443.814 kb on - strand, within Dshi_0456 at 443.847 kb on + strand, within Dshi_0456 at 443.863 kb on + strand, within Dshi_0456 at 443.884 kb on - strand, within Dshi_0456 at 443.912 kb on + strand at 443.912 kb on + strand at 443.948 kb on - strand at 443.979 kb on - strand at 444.020 kb on - strand at 444.054 kb on + strand at 444.127 kb on - strand, within Dshi_0457 at 444.203 kb on - strand, within Dshi_0457 at 444.291 kb on + strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.299 kb on - strand, within Dshi_0457 at 444.372 kb on - strand, within Dshi_0457 at 444.389 kb on - strand, within Dshi_0457 at 444.420 kb on - strand, within Dshi_0457 at 444.526 kb on - strand, within Dshi_0457 at 444.541 kb on + strand, within Dshi_0457 at 444.559 kb on + strand, within Dshi_0457 at 444.688 kb on - strand, within Dshi_0457 at 444.712 kb on - strand, within Dshi_0457 at 444.801 kb on - strand, within Dshi_0457 at 444.864 kb on - strand at 444.886 kb on - strand at 444.946 kb on + strand, within Dshi_0458 at 444.977 kb on + strand, within Dshi_0458 at 444.982 kb on + strand, within Dshi_0458 at 444.992 kb on + strand, within Dshi_0458 at 445.092 kb on + strand, within Dshi_0458 at 445.102 kb on - strand, within Dshi_0458 at 445.107 kb on - strand, within Dshi_0458 at 445.173 kb on + strand, within Dshi_0458 at 445.178 kb on + strand, within Dshi_0458 at 445.181 kb on - strand, within Dshi_0458 at 445.183 kb on + strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.205 kb on + strand, within Dshi_0458 at 445.208 kb on - strand, within Dshi_0458 at 445.213 kb on - strand, within Dshi_0458 at 445.219 kb on - strand, within Dshi_0458 at 445.288 kb on - strand at 445.293 kb on + strand at 445.313 kb on - strand at 445.360 kb on - strand, within Dshi_0459 at 445.371 kb on - strand, within Dshi_0459 at 445.384 kb on + strand, within Dshi_0459 at 445.385 kb on + strand, within Dshi_0459 at 445.422 kb on + strand, within Dshi_0459 at 445.611 kb on + strand, within Dshi_0459 at 445.628 kb on - strand, within Dshi_0459 at 445.629 kb on - strand, within Dshi_0459 at 445.657 kb on + strand, within Dshi_0459 at 445.665 kb on - strand, within Dshi_0459 at 445.667 kb on + strand, within Dshi_0459 at 445.706 kb on - strand, within Dshi_0459 at 445.775 kb on - strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.805 kb on + strand, within Dshi_0459 at 445.807 kb on - strand, within Dshi_0459 at 445.807 kb on - strand, within Dshi_0459 at 445.830 kb on - strand, within Dshi_0459 at 445.832 kb on + strand, within Dshi_0459 at 445.840 kb on - strand, within Dshi_0459 at 445.868 kb on - strand, within Dshi_0459
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 443,023 + +1.1 443,031 - -0.8 443,033 + -0.8 443,056 - -0.4 443,123 - +0.2 443,205 - Dshi_0456 0.17 -0.6 443,207 + Dshi_0456 0.18 -2.0 443,256 - Dshi_0456 0.23 -1.2 443,256 - Dshi_0456 0.23 -1.1 443,304 + Dshi_0456 0.28 +2.4 443,311 + Dshi_0456 0.28 +0.2 443,311 + Dshi_0456 0.28 +0.1 443,342 + Dshi_0456 0.32 -0.3 443,352 + Dshi_0456 0.33 -0.3 443,376 + Dshi_0456 0.35 +1.2 443,379 - Dshi_0456 0.36 -0.3 443,421 - Dshi_0456 0.40 -0.2 443,421 - Dshi_0456 0.40 +2.2 443,431 + Dshi_0456 0.41 -3.1 443,432 - Dshi_0456 0.41 +2.1 443,445 - Dshi_0456 0.42 -0.3 443,563 + Dshi_0456 0.55 -1.4 443,578 + Dshi_0456 0.56 +2.1 443,634 - Dshi_0456 0.62 -1.4 443,636 + Dshi_0456 0.62 -0.6 443,637 + Dshi_0456 0.62 +1.2 443,637 + Dshi_0456 0.62 +0.2 443,637 + Dshi_0456 0.62 +1.4 443,639 - Dshi_0456 0.63 +0.3 443,671 - Dshi_0456 0.66 +2.7 443,683 - Dshi_0456 0.67 -0.6 443,685 + Dshi_0456 0.68 +0.1 443,685 + Dshi_0456 0.68 +1.0 443,693 - Dshi_0456 0.68 -0.0 443,721 + Dshi_0456 0.71 +0.5 443,737 + Dshi_0456 0.73 -2.6 443,745 - Dshi_0456 0.74 -3.0 443,772 + Dshi_0456 0.77 +3.4 443,790 + Dshi_0456 0.78 -0.5 443,797 + Dshi_0456 0.79 -0.8 443,801 + Dshi_0456 0.80 -2.5 443,806 + Dshi_0456 0.80 -0.3 443,806 + Dshi_0456 0.80 +4.7 443,812 + Dshi_0456 0.81 -0.3 443,814 - Dshi_0456 0.81 -1.2 443,847 + Dshi_0456 0.84 -0.3 443,863 + Dshi_0456 0.86 -1.9 443,884 - Dshi_0456 0.88 +1.5 443,912 + +0.4 443,912 + +0.4 443,948 - +2.8 443,979 - +2.0 444,020 - -0.8 444,054 + +0.2 444,127 - Dshi_0457 0.15 +2.8 444,203 - Dshi_0457 0.23 -0.9 444,291 + Dshi_0457 0.33 +2.9 444,294 - Dshi_0457 0.33 -1.8 444,294 - Dshi_0457 0.33 +0.8 444,294 - Dshi_0457 0.33 -1.0 444,294 - Dshi_0457 0.33 +1.0 444,299 - Dshi_0457 0.34 +1.7 444,372 - Dshi_0457 0.42 -2.1 444,389 - Dshi_0457 0.44 -0.9 444,420 - Dshi_0457 0.47 +1.8 444,526 - Dshi_0457 0.59 +0.5 444,541 + Dshi_0457 0.60 +0.4 444,559 + Dshi_0457 0.62 +0.1 444,688 - Dshi_0457 0.77 +1.8 444,712 - Dshi_0457 0.79 -1.7 444,801 - Dshi_0457 0.89 +0.5 444,864 - +1.6 444,886 - +1.2 444,946 + Dshi_0458 0.13 -0.3 444,977 + Dshi_0458 0.22 -0.9 444,982 + Dshi_0458 0.23 -2.5 444,992 + Dshi_0458 0.26 -0.8 445,092 + Dshi_0458 0.52 +0.7 445,102 - Dshi_0458 0.55 -1.6 445,107 - Dshi_0458 0.56 +2.2 445,173 + Dshi_0458 0.74 -0.4 445,178 + Dshi_0458 0.76 -0.4 445,181 - Dshi_0458 0.76 -0.2 445,183 + Dshi_0458 0.77 -1.0 445,191 - Dshi_0458 0.79 -1.2 445,191 - Dshi_0458 0.79 -0.6 445,191 - Dshi_0458 0.79 -0.0 445,205 + Dshi_0458 0.83 -1.4 445,208 - Dshi_0458 0.84 -1.1 445,213 - Dshi_0458 0.85 -3.4 445,219 - Dshi_0458 0.87 +0.3 445,288 - +0.5 445,293 + +3.5 445,313 - -1.8 445,360 - Dshi_0459 0.10 -1.9 445,371 - Dshi_0459 0.11 -0.7 445,384 + Dshi_0459 0.13 +2.8 445,385 + Dshi_0459 0.13 +0.4 445,422 + Dshi_0459 0.17 +0.9 445,611 + Dshi_0459 0.36 -2.1 445,628 - Dshi_0459 0.38 +0.5 445,629 - Dshi_0459 0.38 -2.2 445,657 + Dshi_0459 0.41 -2.8 445,665 - Dshi_0459 0.42 +0.5 445,667 + Dshi_0459 0.42 -1.0 445,706 - Dshi_0459 0.46 -0.4 445,775 - Dshi_0459 0.53 +0.0 445,799 + Dshi_0459 0.56 +2.2 445,799 + Dshi_0459 0.56 -1.4 445,799 + Dshi_0459 0.56 +0.0 445,805 + Dshi_0459 0.56 -0.4 445,807 - Dshi_0459 0.57 +2.0 445,807 - Dshi_0459 0.57 -1.1 445,830 - Dshi_0459 0.59 -1.1 445,832 + Dshi_0459 0.59 -2.9 445,840 - Dshi_0459 0.60 +0.8 445,868 - Dshi_0459 0.63 +1.2
Or see this region's nucleotide sequence