Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0435 and Dshi_0436 overlap by 4 nucleotides Dshi_0436 and Dshi_0437 overlap by 4 nucleotides Dshi_0437 and Dshi_0438 overlap by 4 nucleotides Dshi_0438 and Dshi_0439 overlap by 10 nucleotides Dshi_0439 and Dshi_0440 overlap by 4 nucleotides Dshi_0440 and Dshi_0441 are separated by 4 nucleotides
Dshi_0435: Dshi_0435 - ATP synthase F1, beta subunit (RefSeq), at 427,117 to 428,505
_0435
Dshi_0436: Dshi_0436 - ATP synthase F1, epsilon subunit (RefSeq), at 428,502 to 428,912
_0436
Dshi_0437: Dshi_0437 - F0F1-ATPase subunit, putative (RefSeq), at 428,909 to 429,196
_0437
Dshi_0438: Dshi_0438 - hypothetical protein (RefSeq), at 429,193 to 429,498
_0438
Dshi_0439: Dshi_0439 - ATP synthase F0, A subunit (RefSeq), at 429,489 to 430,178
_0439
Dshi_0440: Dshi_0440 - ATP synthase F0, C subunit (RefSeq), at 430,175 to 430,465
_0440
Dshi_0441: Dshi_0441 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 430,470 to 431,237
_0441
Position (kb) 429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 428.209 kb on + strand, within Dshi_0435 at 428.264 kb on - strand, within Dshi_0435 at 428.278 kb on + strand, within Dshi_0435 at 428.278 kb on + strand, within Dshi_0435 at 428.286 kb on - strand, within Dshi_0435 at 428.312 kb on + strand, within Dshi_0435 at 428.405 kb on + strand at 428.530 kb on + strand at 428.571 kb on - strand, within Dshi_0436 at 428.781 kb on - strand, within Dshi_0436 at 428.831 kb on - strand, within Dshi_0436 at 428.957 kb on + strand, within Dshi_0437 at 429.079 kb on - strand, within Dshi_0437 at 429.183 kb on - strand at 429.273 kb on + strand, within Dshi_0438 at 429.281 kb on - strand, within Dshi_0438 at 429.330 kb on + strand, within Dshi_0438 at 429.332 kb on + strand, within Dshi_0438 at 429.342 kb on + strand, within Dshi_0438 at 429.411 kb on - strand, within Dshi_0438 at 429.492 kb on + strand at 429.533 kb on - strand at 429.587 kb on - strand, within Dshi_0439 at 429.607 kb on + strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.652 kb on + strand, within Dshi_0439 at 429.749 kb on + strand, within Dshi_0439 at 429.760 kb on + strand, within Dshi_0439 at 429.775 kb on + strand, within Dshi_0439 at 429.778 kb on - strand, within Dshi_0439 at 429.787 kb on + strand, within Dshi_0439 at 429.810 kb on + strand, within Dshi_0439 at 429.882 kb on - strand, within Dshi_0439 at 429.904 kb on + strand, within Dshi_0439 at 430.025 kb on + strand, within Dshi_0439 at 430.064 kb on - strand, within Dshi_0439 at 430.228 kb on - strand, within Dshi_0440 at 430.256 kb on - strand, within Dshi_0440 at 430.358 kb on + strand, within Dshi_0440 at 430.460 kb on + strand at 430.460 kb on + strand at 430.468 kb on - strand at 430.483 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 428,209 + Dshi_0435 0.79 +0.2 428,264 - Dshi_0435 0.83 +1.8 428,278 + Dshi_0435 0.84 +1.4 428,278 + Dshi_0435 0.84 +0.1 428,286 - Dshi_0435 0.84 +0.9 428,312 + Dshi_0435 0.86 +0.3 428,405 + +1.9 428,530 + +3.3 428,571 - Dshi_0436 0.17 +0.8 428,781 - Dshi_0436 0.68 -2.3 428,831 - Dshi_0436 0.80 -1.9 428,957 + Dshi_0437 0.17 -0.8 429,079 - Dshi_0437 0.59 +0.3 429,183 - -0.1 429,273 + Dshi_0438 0.26 +1.8 429,281 - Dshi_0438 0.29 +2.8 429,330 + Dshi_0438 0.45 +0.4 429,332 + Dshi_0438 0.45 -1.1 429,342 + Dshi_0438 0.49 +2.3 429,411 - Dshi_0438 0.71 +0.4 429,492 + +2.4 429,533 - +1.0 429,587 - Dshi_0439 0.14 +2.3 429,607 + Dshi_0439 0.17 -1.9 429,615 - Dshi_0439 0.18 +1.1 429,615 - Dshi_0439 0.18 +0.9 429,615 - Dshi_0439 0.18 +2.8 429,615 - Dshi_0439 0.18 -2.1 429,652 + Dshi_0439 0.24 +0.8 429,749 + Dshi_0439 0.38 -2.1 429,760 + Dshi_0439 0.39 +2.6 429,775 + Dshi_0439 0.41 +1.3 429,778 - Dshi_0439 0.42 +0.2 429,787 + Dshi_0439 0.43 +1.9 429,810 + Dshi_0439 0.47 -1.3 429,882 - Dshi_0439 0.57 +0.5 429,904 + Dshi_0439 0.60 -1.3 430,025 + Dshi_0439 0.78 +1.3 430,064 - Dshi_0439 0.83 -3.0 430,228 - Dshi_0440 0.18 +1.3 430,256 - Dshi_0440 0.28 +0.1 430,358 + Dshi_0440 0.63 +2.3 430,460 + +1.3 430,460 + +1.3 430,468 - -0.0 430,483 + +1.7
Or see this region's nucleotide sequence