Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0382 and Dshi_0383 are separated by 124 nucleotides Dshi_0383 and Dshi_0384 are separated by 121 nucleotides Dshi_0384 and Dshi_0385 are separated by 57 nucleotides
Dshi_0382: Dshi_0382 - phenylacetate-CoA ligase, putative (RefSeq), at 364,512 to 365,732
_0382
Dshi_0383: Dshi_0383 - hypothetical protein (RefSeq), at 365,857 to 366,321
_0383
Dshi_0384: Dshi_0384 - hypothetical protein (RefSeq), at 366,443 to 366,901
_0384
Dshi_0385: Dshi_0385 - DNA-directed DNA polymerase (RefSeq), at 366,959 to 368,212
_0385
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 365.050 kb on + strand, within Dshi_0382 at 365.058 kb on - strand, within Dshi_0382 at 365.080 kb on + strand, within Dshi_0382 at 365.117 kb on + strand, within Dshi_0382 at 365.184 kb on - strand, within Dshi_0382 at 365.517 kb on + strand, within Dshi_0382 at 365.529 kb on - strand, within Dshi_0382 at 365.656 kb on - strand at 365.666 kb on + strand at 365.778 kb on - strand at 365.865 kb on + strand at 365.928 kb on - strand, within Dshi_0383 at 366.028 kb on - strand, within Dshi_0383 at 366.337 kb on + strand at 366.369 kb on + strand at 366.369 kb on + strand at 366.369 kb on + strand at 366.377 kb on - strand at 366.784 kb on - strand, within Dshi_0384 at 366.937 kb on + strand at 367.049 kb on + strand at 367.071 kb on - strand at 367.073 kb on - strand at 367.127 kb on - strand, within Dshi_0385 at 367.283 kb on + strand, within Dshi_0385 at 367.295 kb on - strand, within Dshi_0385
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 365,050 + Dshi_0382 0.44 +3.8 365,058 - Dshi_0382 0.45 +1.2 365,080 + Dshi_0382 0.47 +0.2 365,117 + Dshi_0382 0.50 -0.2 365,184 - Dshi_0382 0.55 +2.2 365,517 + Dshi_0382 0.82 +2.2 365,529 - Dshi_0382 0.83 +1.2 365,656 - +0.8 365,666 + +4.6 365,778 - -1.2 365,865 + +3.5 365,928 - Dshi_0383 0.15 -2.0 366,028 - Dshi_0383 0.37 +1.4 366,337 + -0.1 366,369 + -0.4 366,369 + -2.4 366,369 + -0.4 366,377 - +0.2 366,784 - Dshi_0384 0.74 -0.8 366,937 + +0.3 367,049 + +0.4 367,071 - -2.4 367,073 - -1.4 367,127 - Dshi_0385 0.13 -2.5 367,283 + Dshi_0385 0.26 -1.6 367,295 - Dshi_0385 0.27 +0.2
Or see this region's nucleotide sequence