Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0369 and Dshi_0370 overlap by 1 nucleotides Dshi_0370 and Dshi_0371 are separated by 18 nucleotides Dshi_0371 and Dshi_0372 are separated by 100 nucleotides Dshi_0372 and Dshi_0373 are separated by 144 nucleotides
Dshi_0369: Dshi_0369 - sodium:galactoside symporter family protein, putative (RefSeq), at 352,726 to 353,964
_0369
Dshi_0370: Dshi_0370 - hypothetical protein (RefSeq), at 353,964 to 354,554
_0370
Dshi_0371: Dshi_0371 - short-chain dehydrogenase/reductase SDR (RefSeq), at 354,573 to 355,304
_0371
Dshi_0372: Dshi_0372 - hypothetical protein (RefSeq), at 355,405 to 355,728
_0372
Dshi_0373: Dshi_0373 - Long-chain-fatty-acid--CoA ligase (RefSeq), at 355,873 to 357,843
_0373
Position (kb) 354
355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 353.611 kb on + strand, within Dshi_0369 at 353.683 kb on + strand, within Dshi_0369 at 353.785 kb on - strand, within Dshi_0369 at 353.825 kb on - strand, within Dshi_0369 at 353.825 kb on - strand, within Dshi_0369 at 353.842 kb on + strand at 353.855 kb on + strand at 353.872 kb on + strand at 353.893 kb on + strand at 353.937 kb on - strand at 354.022 kb on - strand at 354.064 kb on - strand, within Dshi_0370 at 354.135 kb on + strand, within Dshi_0370 at 354.154 kb on + strand, within Dshi_0370 at 354.290 kb on + strand, within Dshi_0370 at 354.383 kb on + strand, within Dshi_0370 at 354.424 kb on + strand, within Dshi_0370 at 354.426 kb on - strand, within Dshi_0370 at 354.489 kb on + strand, within Dshi_0370 at 354.502 kb on - strand at 354.517 kb on - strand at 354.571 kb on - strand at 354.618 kb on - strand at 354.645 kb on + strand at 354.694 kb on - strand, within Dshi_0371 at 354.711 kb on + strand, within Dshi_0371 at 354.731 kb on + strand, within Dshi_0371 at 354.769 kb on + strand, within Dshi_0371 at 354.803 kb on - strand, within Dshi_0371 at 354.926 kb on + strand, within Dshi_0371 at 354.940 kb on - strand, within Dshi_0371 at 355.010 kb on + strand, within Dshi_0371 at 355.022 kb on + strand, within Dshi_0371 at 355.199 kb on + strand, within Dshi_0371 at 355.265 kb on + strand at 355.459 kb on + strand, within Dshi_0372 at 355.535 kb on - strand, within Dshi_0372 at 355.575 kb on + strand, within Dshi_0372 at 355.623 kb on + strand, within Dshi_0372 at 355.693 kb on - strand, within Dshi_0372 at 355.697 kb on - strand at 355.912 kb on + strand at 355.960 kb on - strand at 355.990 kb on + strand at 355.997 kb on - strand at 355.998 kb on - strand at 356.066 kb on - strand at 356.066 kb on - strand at 356.109 kb on - strand, within Dshi_0373 at 356.125 kb on + strand, within Dshi_0373 at 356.200 kb on - strand, within Dshi_0373 at 356.214 kb on + strand, within Dshi_0373 at 356.287 kb on - strand, within Dshi_0373 at 356.292 kb on + strand, within Dshi_0373 at 356.297 kb on + strand, within Dshi_0373
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 353,611 + Dshi_0369 0.71 +0.1 353,683 + Dshi_0369 0.77 +2.2 353,785 - Dshi_0369 0.85 -1.1 353,825 - Dshi_0369 0.89 -1.8 353,825 - Dshi_0369 0.89 +2.0 353,842 + -2.5 353,855 + +0.3 353,872 + -2.8 353,893 + -0.4 353,937 - +3.0 354,022 - -3.2 354,064 - Dshi_0370 0.17 +1.2 354,135 + Dshi_0370 0.29 +1.2 354,154 + Dshi_0370 0.32 -1.2 354,290 + Dshi_0370 0.55 +0.8 354,383 + Dshi_0370 0.71 +2.2 354,424 + Dshi_0370 0.78 +1.2 354,426 - Dshi_0370 0.78 -1.8 354,489 + Dshi_0370 0.89 +1.8 354,502 - +1.2 354,517 - +1.5 354,571 - +2.2 354,618 - +3.2 354,645 + +1.2 354,694 - Dshi_0371 0.17 +2.2 354,711 + Dshi_0371 0.19 -2.4 354,731 + Dshi_0371 0.22 -0.7 354,769 + Dshi_0371 0.27 +2.7 354,803 - Dshi_0371 0.31 +1.3 354,926 + Dshi_0371 0.48 -1.2 354,940 - Dshi_0371 0.50 +0.2 355,010 + Dshi_0371 0.60 -2.2 355,022 + Dshi_0371 0.61 -3.2 355,199 + Dshi_0371 0.86 +2.7 355,265 + -0.5 355,459 + Dshi_0372 0.17 +1.2 355,535 - Dshi_0372 0.40 -0.7 355,575 + Dshi_0372 0.52 -1.8 355,623 + Dshi_0372 0.67 -0.8 355,693 - Dshi_0372 0.89 -2.3 355,697 - +0.2 355,912 + +0.1 355,960 - -0.1 355,990 + +1.2 355,997 - -0.8 355,998 - -0.2 356,066 - +3.6 356,066 - +4.2 356,109 - Dshi_0373 0.12 -2.3 356,125 + Dshi_0373 0.13 +0.7 356,200 - Dshi_0373 0.17 -0.6 356,214 + Dshi_0373 0.17 +0.0 356,287 - Dshi_0373 0.21 +1.2 356,292 + Dshi_0373 0.21 -0.8 356,297 + Dshi_0373 0.22 +0.5
Or see this region's nucleotide sequence