Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0356 and Dshi_0357 are separated by 2 nucleotides Dshi_0357 and Dshi_0358 are separated by 164 nucleotides Dshi_0358 and Dshi_0359 are separated by 4 nucleotides Dshi_0359 and Dshi_0360 are separated by 53 nucleotides
Dshi_0356: Dshi_0356 - protein of unknown function DUF6 transmembrane (RefSeq), at 339,214 to 340,104
_0356
Dshi_0357: Dshi_0357 - transcriptional regulator, ArsR family (RefSeq), at 340,107 to 340,445
_0357
Dshi_0358: Dshi_0358 - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 340,610 to 342,199
_0358
Dshi_0359: Dshi_0359 - lipoprotein signal peptidase (RefSeq), at 342,204 to 342,680
_0359
Dshi_0360: Dshi_0360 - hypothetical protein (RefSeq), at 342,734 to 343,279
_0360
Position (kb) 340
341
342
343 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 339.615 kb on - strand, within Dshi_0356 at 339.698 kb on + strand, within Dshi_0356 at 339.801 kb on + strand, within Dshi_0356 at 339.863 kb on + strand, within Dshi_0356 at 339.863 kb on + strand, within Dshi_0356 at 339.878 kb on + strand, within Dshi_0356 at 339.923 kb on - strand, within Dshi_0356 at 339.958 kb on + strand, within Dshi_0356 at 339.959 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 339.970 kb on - strand, within Dshi_0356 at 340.026 kb on + strand at 340.072 kb on - strand at 340.093 kb on + strand at 340.174 kb on + strand, within Dshi_0357 at 340.174 kb on + strand, within Dshi_0357 at 340.192 kb on - strand, within Dshi_0357 at 340.234 kb on + strand, within Dshi_0357 at 340.272 kb on + strand, within Dshi_0357 at 340.304 kb on - strand, within Dshi_0357 at 340.426 kb on + strand at 340.441 kb on + strand at 340.479 kb on - strand at 340.502 kb on + strand at 340.572 kb on - strand at 340.633 kb on - strand at 342.198 kb on + strand at 342.241 kb on + strand at 342.329 kb on - strand, within Dshi_0359 at 342.427 kb on + strand, within Dshi_0359 at 342.448 kb on - strand, within Dshi_0359 at 342.571 kb on + strand, within Dshi_0359 at 342.630 kb on + strand, within Dshi_0359 at 342.645 kb on - strand at 342.843 kb on + strand, within Dshi_0360 at 342.932 kb on - strand, within Dshi_0360 at 343.039 kb on - strand, within Dshi_0360 at 343.045 kb on + strand, within Dshi_0360
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 339,615 - Dshi_0356 0.45 -1.4 339,698 + Dshi_0356 0.54 +4.9 339,801 + Dshi_0356 0.66 -0.8 339,863 + Dshi_0356 0.73 +0.2 339,863 + Dshi_0356 0.73 +1.7 339,878 + Dshi_0356 0.75 +0.2 339,923 - Dshi_0356 0.80 +1.2 339,958 + Dshi_0356 0.84 -0.1 339,959 - Dshi_0356 0.84 +2.2 339,970 - Dshi_0356 0.85 +4.0 339,970 - Dshi_0356 0.85 +1.2 339,970 - Dshi_0356 0.85 +1.2 340,026 + +1.2 340,072 - -2.0 340,093 + +0.4 340,174 + Dshi_0357 0.20 +1.2 340,174 + Dshi_0357 0.20 +0.2 340,192 - Dshi_0357 0.25 +0.2 340,234 + Dshi_0357 0.37 +1.2 340,272 + Dshi_0357 0.49 -1.7 340,304 - Dshi_0357 0.58 +2.9 340,426 + -1.4 340,441 + +0.6 340,479 - -0.3 340,502 + -0.4 340,572 - -1.0 340,633 - +1.2 342,198 + +0.8 342,241 + -0.8 342,329 - Dshi_0359 0.26 -1.8 342,427 + Dshi_0359 0.47 +1.7 342,448 - Dshi_0359 0.51 -0.7 342,571 + Dshi_0359 0.77 +1.2 342,630 + Dshi_0359 0.89 +0.6 342,645 - +2.2 342,843 + Dshi_0360 0.20 +1.2 342,932 - Dshi_0360 0.36 -0.4 343,039 - Dshi_0360 0.56 +1.3 343,045 + Dshi_0360 0.57 +0.7
Or see this region's nucleotide sequence