Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0335

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0334 and Dshi_0335 are separated by 36 nucleotidesDshi_0335 and Dshi_0336 are separated by 4 nucleotides Dshi_0334: Dshi_0334 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 320,898 to 322,301 _0334 Dshi_0335: Dshi_0335 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 322,338 to 323,750 _0335 Dshi_0336: Dshi_0336 - SNARE associated Golgi protein (RefSeq), at 323,755 to 324,486 _0336 Position (kb) 322 323 324Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 321.379 kb on - strand, within Dshi_0334at 321.490 kb on - strand, within Dshi_0334at 321.563 kb on + strand, within Dshi_0334at 321.563 kb on + strand, within Dshi_0334at 321.578 kb on + strand, within Dshi_0334at 321.748 kb on + strand, within Dshi_0334at 321.962 kb on - strand, within Dshi_0334at 321.985 kb on - strand, within Dshi_0334at 322.001 kb on + strand, within Dshi_0334at 322.001 kb on + strand, within Dshi_0334at 322.001 kb on + strand, within Dshi_0334at 322.009 kb on - strand, within Dshi_0334at 322.029 kb on + strand, within Dshi_0334at 322.078 kb on + strand, within Dshi_0334at 322.080 kb on + strand, within Dshi_0334at 322.162 kb on - strandat 322.334 kb on - strandat 322.381 kb on + strandat 322.439 kb on + strandat 322.439 kb on + strandat 322.439 kb on + strandat 322.447 kb on - strandat 322.447 kb on - strandat 322.447 kb on - strandat 322.512 kb on - strand, within Dshi_0335at 322.589 kb on + strand, within Dshi_0335at 322.708 kb on + strand, within Dshi_0335at 322.716 kb on - strand, within Dshi_0335at 322.742 kb on - strand, within Dshi_0335at 322.807 kb on + strand, within Dshi_0335at 323.157 kb on - strand, within Dshi_0335at 323.165 kb on - strand, within Dshi_0335at 323.173 kb on - strand, within Dshi_0335at 323.187 kb on + strand, within Dshi_0335at 323.263 kb on - strand, within Dshi_0335at 323.263 kb on - strand, within Dshi_0335at 323.263 kb on - strand, within Dshi_0335at 323.263 kb on - strand, within Dshi_0335at 323.389 kb on - strand, within Dshi_0335at 323.427 kb on + strand, within Dshi_0335at 323.427 kb on + strand, within Dshi_0335at 323.558 kb on + strand, within Dshi_0335at 323.568 kb on - strand, within Dshi_0335at 323.568 kb on - strand, within Dshi_0335at 323.583 kb on + strand, within Dshi_0335at 323.613 kb on - strandat 323.675 kb on - strandat 323.686 kb on + strandat 323.696 kb on + strandat 323.696 kb on + strandat 323.746 kb on + strandat 323.753 kb on - strandat 323.761 kb on - strandat 323.770 kb on - strandat 323.797 kb on - strandat 323.819 kb on - strandat 323.871 kb on - strand, within Dshi_0336at 323.914 kb on + strand, within Dshi_0336at 323.914 kb on + strand, within Dshi_0336at 323.914 kb on + strand, within Dshi_0336at 323.914 kb on + strand, within Dshi_0336at 324.072 kb on + strand, within Dshi_0336at 324.077 kb on + strand, within Dshi_0336at 324.077 kb on + strand, within Dshi_0336at 324.085 kb on - strand, within Dshi_0336at 324.099 kb on + strand, within Dshi_0336at 324.138 kb on + strand, within Dshi_0336at 324.240 kb on + strand, within Dshi_0336at 324.240 kb on + strand, within Dshi_0336at 324.305 kb on - strand, within Dshi_0336at 324.311 kb on - strand, within Dshi_0336at 324.369 kb on + strand, within Dshi_0336at 324.376 kb on + strand, within Dshi_0336at 324.385 kb on + strand, within Dshi_0336at 324.393 kb on + strand, within Dshi_0336at 324.395 kb on - strand, within Dshi_0336at 324.443 kb on + strandat 324.448 kb on + strandat 324.546 kb on + strandat 324.546 kb on + strandat 324.554 kb on - strandat 324.554 kb on - strandat 324.573 kb on - strandat 324.634 kb on + strandat 324.732 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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321,379 - Dshi_0334 0.34 -3.6
321,490 - Dshi_0334 0.42 +1.6
321,563 + Dshi_0334 0.47 -0.4
321,563 + Dshi_0334 0.47 -0.0
321,578 + Dshi_0334 0.48 +3.7
321,748 + Dshi_0334 0.61 +2.1
321,962 - Dshi_0334 0.76 -0.9
321,985 - Dshi_0334 0.77 -0.7
322,001 + Dshi_0334 0.79 -0.4
322,001 + Dshi_0334 0.79 +1.7
322,001 + Dshi_0334 0.79 +0.1
322,009 - Dshi_0334 0.79 +1.5
322,029 + Dshi_0334 0.81 +0.4
322,078 + Dshi_0334 0.84 -1.2
322,080 + Dshi_0334 0.84 -0.9
322,162 - -0.1
322,334 - -2.2
322,381 + +0.8
322,439 + -2.9
322,439 + +4.8
322,439 + +0.6
322,447 - +4.2
322,447 - +2.1
322,447 - +0.9
322,512 - Dshi_0335 0.12 -2.8
322,589 + Dshi_0335 0.18 -0.4
322,708 + Dshi_0335 0.26 +2.7
322,716 - Dshi_0335 0.27 +3.5
322,742 - Dshi_0335 0.29 +0.6
322,807 + Dshi_0335 0.33 +1.1
323,157 - Dshi_0335 0.58 -1.2
323,165 - Dshi_0335 0.59 -2.3
323,173 - Dshi_0335 0.59 +0.1
323,187 + Dshi_0335 0.60 +0.1
323,263 - Dshi_0335 0.65 +0.5
323,263 - Dshi_0335 0.65 +1.6
323,263 - Dshi_0335 0.65 +0.2
323,263 - Dshi_0335 0.65 +1.1
323,389 - Dshi_0335 0.74 +1.2
323,427 + Dshi_0335 0.77 +0.0
323,427 + Dshi_0335 0.77 +2.4
323,558 + Dshi_0335 0.86 +0.7
323,568 - Dshi_0335 0.87 +0.4
323,568 - Dshi_0335 0.87 +0.2
323,583 + Dshi_0335 0.88 +1.0
323,613 - +0.5
323,675 - +1.8
323,686 + -0.3
323,696 + -2.0
323,696 + -0.1
323,746 + +0.7
323,753 - -0.0
323,761 - +0.7
323,770 - -1.2
323,797 - +1.1
323,819 - -3.5
323,871 - Dshi_0336 0.16 -0.7
323,914 + Dshi_0336 0.22 -2.6
323,914 + Dshi_0336 0.22 -3.8
323,914 + Dshi_0336 0.22 -1.2
323,914 + Dshi_0336 0.22 +0.1
324,072 + Dshi_0336 0.43 -0.6
324,077 + Dshi_0336 0.44 +1.4
324,077 + Dshi_0336 0.44 -2.6
324,085 - Dshi_0336 0.45 -0.6
324,099 + Dshi_0336 0.47 +1.1
324,138 + Dshi_0336 0.52 -0.6
324,240 + Dshi_0336 0.66 +3.1
324,240 + Dshi_0336 0.66 +2.1
324,305 - Dshi_0336 0.75 +2.1
324,311 - Dshi_0336 0.76 -0.0
324,369 + Dshi_0336 0.84 +0.1
324,376 + Dshi_0336 0.85 +0.6
324,385 + Dshi_0336 0.86 +1.4
324,393 + Dshi_0336 0.87 +2.6
324,395 - Dshi_0336 0.87 +0.6
324,443 + +4.5
324,448 + -0.3
324,546 + -0.2
324,546 + +0.5
324,554 - +1.5
324,554 - -0.2
324,573 - -2.7
324,634 + +1.0
324,732 + -0.3

Or see this region's nucleotide sequence