Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0326 and Dshi_0327 overlap by 4 nucleotides Dshi_0327 and Dshi_0328 overlap by 4 nucleotides Dshi_0328 and Dshi_0329 are separated by 121 nucleotides
Dshi_0326: Dshi_0326 - GTP-binding protein HSR1-related (RefSeq), at 313,718 to 314,371
_0326
Dshi_0327: Dshi_0327 - MOSC domain containing protein (RefSeq), at 314,368 to 315,117
_0327
Dshi_0328: Dshi_0328 - 60 kDa inner membrane insertion protein (RefSeq), at 315,114 to 316,934
_0328
Dshi_0329: Dshi_0329 - diguanylate cyclase/phosphodiesterase (RefSeq), at 317,056 to 318,645
_0329
Position (kb) 315
316
317 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 317.063 kb on + strand at 317.242 kb on + strand, within Dshi_0329 at 317.300 kb on + strand at 317.333 kb on + strand, within Dshi_0329 at 317.517 kb on + strand, within Dshi_0329 at 317.556 kb on + strand, within Dshi_0329 at 317.564 kb on - strand, within Dshi_0329 at 317.564 kb on - strand, within Dshi_0329 at 317.745 kb on - strand, within Dshi_0329 at 317.746 kb on + strand, within Dshi_0329 at 317.749 kb on - strand, within Dshi_0329 at 317.771 kb on + strand, within Dshi_0329 at 317.779 kb on - strand, within Dshi_0329 at 317.841 kb on - strand, within Dshi_0329 at 317.848 kb on - strand, within Dshi_0329 at 317.853 kb on - strand, within Dshi_0329 at 317.870 kb on - strand, within Dshi_0329
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 317,063 + +0.9 317,242 + Dshi_0329 0.12 +2.3 317,300 + -0.9 317,333 + Dshi_0329 0.17 +0.6 317,517 + Dshi_0329 0.29 +0.9 317,556 + Dshi_0329 0.31 -2.4 317,564 - Dshi_0329 0.32 -0.9 317,564 - Dshi_0329 0.32 -0.3 317,745 - Dshi_0329 0.43 -0.0 317,746 + Dshi_0329 0.43 +0.7 317,749 - Dshi_0329 0.44 +1.1 317,771 + Dshi_0329 0.45 +0.1 317,779 - Dshi_0329 0.45 +1.1 317,841 - Dshi_0329 0.49 -1.1 317,848 - Dshi_0329 0.50 +1.1 317,853 - Dshi_0329 0.50 +4.0 317,870 - Dshi_0329 0.51 -2.4
Or see this region's nucleotide sequence