Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0262 and Dshi_0263 are separated by 127 nucleotides Dshi_0263 and Dshi_0264 are separated by 54 nucleotides Dshi_0264 and Dshi_0265 are separated by 294 nucleotides Dshi_0265 and Dshi_0266 are separated by 72 nucleotides
Dshi_0262: Dshi_0262 - hypothetical protein (RefSeq), at 258,788 to 259,516
_0262
Dshi_0263: Dshi_0263 - methyltransferase FkbM family (RefSeq), at 259,644 to 260,429
_0263
Dshi_0264: Dshi_0264 - hypothetical protein (RefSeq), at 260,484 to 261,542
_0264
Dshi_0265: Dshi_0265 - ribosomal protein L10 (RefSeq), at 261,837 to 262,355
_0265
Dshi_0266: Dshi_0266 - ribosomal protein L7/L12 (RefSeq), at 262,428 to 262,808
_0266
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 259.667 kb on + strand at 259.675 kb on - strand at 259.687 kb on + strand at 259.756 kb on - strand, within Dshi_0263 at 259.760 kb on + strand, within Dshi_0263 at 259.860 kb on - strand, within Dshi_0263 at 259.975 kb on + strand, within Dshi_0263 at 259.983 kb on - strand, within Dshi_0263 at 260.051 kb on + strand, within Dshi_0263 at 260.059 kb on - strand, within Dshi_0263 at 260.059 kb on - strand, within Dshi_0263 at 260.065 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.086 kb on + strand, within Dshi_0263 at 260.094 kb on - strand, within Dshi_0263 at 260.181 kb on + strand, within Dshi_0263 at 260.234 kb on + strand, within Dshi_0263 at 260.278 kb on + strand, within Dshi_0263 at 260.280 kb on - strand, within Dshi_0263 at 260.306 kb on + strand, within Dshi_0263 at 260.329 kb on - strand, within Dshi_0263 at 260.350 kb on + strand, within Dshi_0263 at 260.356 kb on - strand at 260.394 kb on + strand at 260.404 kb on - strand at 260.460 kb on - strand at 260.468 kb on + strand at 260.468 kb on + strand at 260.476 kb on - strand at 260.476 kb on - strand at 260.560 kb on + strand at 260.597 kb on + strand, within Dshi_0264 at 260.667 kb on - strand, within Dshi_0264 at 260.717 kb on + strand, within Dshi_0264 at 260.725 kb on - strand, within Dshi_0264 at 260.735 kb on - strand, within Dshi_0264 at 260.744 kb on + strand, within Dshi_0264 at 260.831 kb on - strand, within Dshi_0264 at 260.913 kb on + strand, within Dshi_0264 at 261.072 kb on + strand, within Dshi_0264 at 261.091 kb on - strand, within Dshi_0264 at 261.287 kb on + strand, within Dshi_0264 at 261.300 kb on + strand, within Dshi_0264 at 261.374 kb on - strand, within Dshi_0264 at 261.376 kb on + strand, within Dshi_0264 at 261.386 kb on + strand, within Dshi_0264 at 261.394 kb on - strand, within Dshi_0264 at 261.507 kb on - strand at 261.507 kb on - strand at 261.568 kb on - strand at 261.568 kb on - strand at 261.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 259,667 + +0.5 259,675 - +2.9 259,687 + +1.1 259,756 - Dshi_0263 0.14 -1.3 259,760 + Dshi_0263 0.15 +1.4 259,860 - Dshi_0263 0.27 +0.3 259,975 + Dshi_0263 0.42 +1.1 259,983 - Dshi_0263 0.43 -1.8 260,051 + Dshi_0263 0.52 +2.9 260,059 - Dshi_0263 0.53 +1.7 260,059 - Dshi_0263 0.53 -0.5 260,065 + Dshi_0263 0.54 +0.3 260,086 + Dshi_0263 0.56 +1.9 260,086 + Dshi_0263 0.56 -0.1 260,086 + Dshi_0263 0.56 -2.1 260,094 - Dshi_0263 0.57 +0.9 260,181 + Dshi_0263 0.68 -1.0 260,234 + Dshi_0263 0.75 -1.2 260,278 + Dshi_0263 0.81 -1.2 260,280 - Dshi_0263 0.81 +1.0 260,306 + Dshi_0263 0.84 -2.0 260,329 - Dshi_0263 0.87 +0.9 260,350 + Dshi_0263 0.90 +0.1 260,356 - +0.2 260,394 + +1.1 260,404 - +2.3 260,460 - +0.0 260,468 + -1.0 260,468 + +3.1 260,476 - +2.0 260,476 - -0.7 260,560 + +2.9 260,597 + Dshi_0264 0.11 +3.9 260,667 - Dshi_0264 0.17 +0.8 260,717 + Dshi_0264 0.22 +1.1 260,725 - Dshi_0264 0.23 +0.1 260,735 - Dshi_0264 0.24 +0.9 260,744 + Dshi_0264 0.25 +1.1 260,831 - Dshi_0264 0.33 -0.3 260,913 + Dshi_0264 0.41 +0.1 261,072 + Dshi_0264 0.56 +1.0 261,091 - Dshi_0264 0.57 +1.7 261,287 + Dshi_0264 0.76 +0.2 261,300 + Dshi_0264 0.77 -1.2 261,374 - Dshi_0264 0.84 +1.3 261,376 + Dshi_0264 0.84 +0.6 261,386 + Dshi_0264 0.85 +1.8 261,394 - Dshi_0264 0.86 +2.4 261,507 - +0.6 261,507 - +1.1 261,568 - +0.8 261,568 - -1.5 261,568 - +0.1
Or see this region's nucleotide sequence