Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0210

Experiment: Anaero. nitrate (e.a.), marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0208 and Dshi_0209 are separated by 37 nucleotidesDshi_0209 and Dshi_0210 are separated by 12 nucleotidesDshi_0210 and Dshi_0211 are separated by 2 nucleotides Dshi_0208: Dshi_0208 - PTS system fructose subfamily IIA component (RefSeq), at 205,876 to 206,265 _0208 Dshi_0209: Dshi_0209 - hypothetical protein (RefSeq), at 206,303 to 207,205 _0209 Dshi_0210: Dshi_0210 - HPr kinase (RefSeq), at 207,218 to 207,655 _0210 Dshi_0211: Dshi_0211 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 207,658 to 209,376 _0211 Position (kb) 207 208Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 206.273 kb on + strandat 206.299 kb on + strandat 206.580 kb on - strand, within Dshi_0209at 206.581 kb on + strand, within Dshi_0209at 206.692 kb on + strand, within Dshi_0209at 206.740 kb on + strand, within Dshi_0209at 206.740 kb on + strand, within Dshi_0209at 206.748 kb on - strand, within Dshi_0209at 206.749 kb on - strand, within Dshi_0209at 206.751 kb on - strand, within Dshi_0209at 206.755 kb on + strand, within Dshi_0209at 206.763 kb on - strand, within Dshi_0209at 206.775 kb on + strand, within Dshi_0209at 206.800 kb on - strand, within Dshi_0209at 207.128 kb on - strandat 207.185 kb on + strandat 207.256 kb on + strandat 207.264 kb on - strand, within Dshi_0210at 207.288 kb on + strand, within Dshi_0210at 207.307 kb on + strand, within Dshi_0210at 207.378 kb on - strand, within Dshi_0210at 207.388 kb on - strand, within Dshi_0210at 207.415 kb on - strand, within Dshi_0210at 207.461 kb on + strand, within Dshi_0210at 207.488 kb on + strand, within Dshi_0210at 207.570 kb on - strand, within Dshi_0210at 207.574 kb on - strand, within Dshi_0210at 207.656 kb on + strandat 207.737 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.792 kb on + strandat 207.838 kb on - strand, within Dshi_0211at 207.954 kb on + strand, within Dshi_0211at 207.981 kb on - strand, within Dshi_0211at 208.099 kb on - strand, within Dshi_0211at 208.130 kb on - strand, within Dshi_0211at 208.150 kb on - strand, within Dshi_0211at 208.188 kb on + strand, within Dshi_0211at 208.226 kb on + strand, within Dshi_0211at 208.244 kb on - strand, within Dshi_0211at 208.357 kb on - strand, within Dshi_0211at 208.604 kb on - strand, within Dshi_0211at 208.655 kb on - strand, within Dshi_0211

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth
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206,273 + +4.1
206,299 + +1.7
206,580 - Dshi_0209 0.31 -1.3
206,581 + Dshi_0209 0.31 -2.5
206,692 + Dshi_0209 0.43 +1.1
206,740 + Dshi_0209 0.48 -2.1
206,740 + Dshi_0209 0.48 -0.2
206,748 - Dshi_0209 0.49 +0.1
206,749 - Dshi_0209 0.49 +1.1
206,751 - Dshi_0209 0.50 -1.3
206,755 + Dshi_0209 0.50 +0.5
206,763 - Dshi_0209 0.51 -0.9
206,775 + Dshi_0209 0.52 -1.7
206,800 - Dshi_0209 0.55 -0.1
207,128 - -0.7
207,185 + -0.5
207,256 + +1.1
207,264 - Dshi_0210 0.11 -4.8
207,288 + Dshi_0210 0.16 -1.5
207,307 + Dshi_0210 0.20 -1.4
207,378 - Dshi_0210 0.37 +1.1
207,388 - Dshi_0210 0.39 -2.4
207,415 - Dshi_0210 0.45 +3.1
207,461 + Dshi_0210 0.55 -1.5
207,488 + Dshi_0210 0.62 -1.0
207,570 - Dshi_0210 0.80 -0.3
207,574 - Dshi_0210 0.81 -0.9
207,656 + -1.0
207,737 + -0.2
207,787 + +3.0
207,787 + -2.4
207,792 + +2.3
207,838 - Dshi_0211 0.10 -0.1
207,954 + Dshi_0211 0.17 -2.9
207,981 - Dshi_0211 0.19 +1.1
208,099 - Dshi_0211 0.26 -0.5
208,130 - Dshi_0211 0.27 -0.4
208,150 - Dshi_0211 0.29 +2.1
208,188 + Dshi_0211 0.31 -1.4
208,226 + Dshi_0211 0.33 -2.1
208,244 - Dshi_0211 0.34 -1.3
208,357 - Dshi_0211 0.41 +1.0
208,604 - Dshi_0211 0.55 -2.1
208,655 - Dshi_0211 0.58 +1.3

Or see this region's nucleotide sequence