Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0208 and Dshi_0209 are separated by 37 nucleotides Dshi_0209 and Dshi_0210 are separated by 12 nucleotides Dshi_0210 and Dshi_0211 are separated by 2 nucleotides
Dshi_0208: Dshi_0208 - PTS system fructose subfamily IIA component (RefSeq), at 205,876 to 206,265
_0208
Dshi_0209: Dshi_0209 - hypothetical protein (RefSeq), at 206,303 to 207,205
_0209
Dshi_0210: Dshi_0210 - HPr kinase (RefSeq), at 207,218 to 207,655
_0210
Dshi_0211: Dshi_0211 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 207,658 to 209,376
_0211
Position (kb)
207
208 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 206.273 kb on + strand at 206.299 kb on + strand at 206.580 kb on - strand, within Dshi_0209 at 206.581 kb on + strand, within Dshi_0209 at 206.692 kb on + strand, within Dshi_0209 at 206.740 kb on + strand, within Dshi_0209 at 206.740 kb on + strand, within Dshi_0209 at 206.748 kb on - strand, within Dshi_0209 at 206.749 kb on - strand, within Dshi_0209 at 206.751 kb on - strand, within Dshi_0209 at 206.755 kb on + strand, within Dshi_0209 at 206.763 kb on - strand, within Dshi_0209 at 206.775 kb on + strand, within Dshi_0209 at 206.800 kb on - strand, within Dshi_0209 at 207.128 kb on - strand at 207.185 kb on + strand at 207.256 kb on + strand at 207.264 kb on - strand, within Dshi_0210 at 207.288 kb on + strand, within Dshi_0210 at 207.307 kb on + strand, within Dshi_0210 at 207.378 kb on - strand, within Dshi_0210 at 207.388 kb on - strand, within Dshi_0210 at 207.415 kb on - strand, within Dshi_0210 at 207.461 kb on + strand, within Dshi_0210 at 207.488 kb on + strand, within Dshi_0210 at 207.570 kb on - strand, within Dshi_0210 at 207.574 kb on - strand, within Dshi_0210 at 207.656 kb on + strand at 207.737 kb on + strand at 207.787 kb on + strand at 207.787 kb on + strand at 207.792 kb on + strand at 207.838 kb on - strand, within Dshi_0211 at 207.954 kb on + strand, within Dshi_0211 at 207.981 kb on - strand, within Dshi_0211 at 208.099 kb on - strand, within Dshi_0211 at 208.130 kb on - strand, within Dshi_0211 at 208.150 kb on - strand, within Dshi_0211 at 208.188 kb on + strand, within Dshi_0211 at 208.226 kb on + strand, within Dshi_0211 at 208.244 kb on - strand, within Dshi_0211 at 208.357 kb on - strand, within Dshi_0211 at 208.604 kb on - strand, within Dshi_0211 at 208.655 kb on - strand, within Dshi_0211
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 206,273 + +4.1 206,299 + +1.7 206,580 - Dshi_0209 0.31 -1.3 206,581 + Dshi_0209 0.31 -2.5 206,692 + Dshi_0209 0.43 +1.1 206,740 + Dshi_0209 0.48 -2.1 206,740 + Dshi_0209 0.48 -0.2 206,748 - Dshi_0209 0.49 +0.1 206,749 - Dshi_0209 0.49 +1.1 206,751 - Dshi_0209 0.50 -1.3 206,755 + Dshi_0209 0.50 +0.5 206,763 - Dshi_0209 0.51 -0.9 206,775 + Dshi_0209 0.52 -1.7 206,800 - Dshi_0209 0.55 -0.1 207,128 - -0.7 207,185 + -0.5 207,256 + +1.1 207,264 - Dshi_0210 0.11 -4.8 207,288 + Dshi_0210 0.16 -1.5 207,307 + Dshi_0210 0.20 -1.4 207,378 - Dshi_0210 0.37 +1.1 207,388 - Dshi_0210 0.39 -2.4 207,415 - Dshi_0210 0.45 +3.1 207,461 + Dshi_0210 0.55 -1.5 207,488 + Dshi_0210 0.62 -1.0 207,570 - Dshi_0210 0.80 -0.3 207,574 - Dshi_0210 0.81 -0.9 207,656 + -1.0 207,737 + -0.2 207,787 + +3.0 207,787 + -2.4 207,792 + +2.3 207,838 - Dshi_0211 0.10 -0.1 207,954 + Dshi_0211 0.17 -2.9 207,981 - Dshi_0211 0.19 +1.1 208,099 - Dshi_0211 0.26 -0.5 208,130 - Dshi_0211 0.27 -0.4 208,150 - Dshi_0211 0.29 +2.1 208,188 + Dshi_0211 0.31 -1.4 208,226 + Dshi_0211 0.33 -2.1 208,244 - Dshi_0211 0.34 -1.3 208,357 - Dshi_0211 0.41 +1.0 208,604 - Dshi_0211 0.55 -2.1 208,655 - Dshi_0211 0.58 +1.3
Or see this region's nucleotide sequence