Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0145 and Dshi_0146 are separated by 8 nucleotides Dshi_0146 and Dshi_0147 are separated by 285 nucleotides Dshi_0147 and Dshi_0148 are separated by 30 nucleotides
Dshi_0145: Dshi_0145 - Aspartate transaminase (RefSeq), at 145,044 to 146,222
_0145
Dshi_0146: Dshi_0146 - Rhodanese domain protein (RefSeq), at 146,231 to 147,106
_0146
Dshi_0147: Dshi_0147 - SsrA-binding protein (RefSeq), at 147,392 to 147,874
_0147
Dshi_0148: Dshi_0148 - GCN5-related N-acetyltransferase (RefSeq), at 147,905 to 148,354
_0148
Position (kb) 146
147
148 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 145.258 kb on + strand, within Dshi_0145 at 145.260 kb on - strand, within Dshi_0145 at 145.316 kb on + strand, within Dshi_0145 at 145.364 kb on + strand at 145.412 kb on - strand, within Dshi_0145 at 145.522 kb on + strand, within Dshi_0145 at 145.726 kb on + strand, within Dshi_0145 at 146.384 kb on - strand, within Dshi_0146 at 146.509 kb on - strand, within Dshi_0146 at 146.531 kb on - strand, within Dshi_0146 at 146.600 kb on - strand, within Dshi_0146 at 146.625 kb on + strand, within Dshi_0146 at 146.725 kb on - strand, within Dshi_0146 at 146.783 kb on - strand, within Dshi_0146 at 147.023 kb on + strand at 147.398 kb on - strand at 147.904 kb on - strand at 147.995 kb on + strand, within Dshi_0148 at 148.081 kb on + strand, within Dshi_0148
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 145,258 + Dshi_0145 0.18 -0.2 145,260 - Dshi_0145 0.18 -1.3 145,316 + Dshi_0145 0.23 +1.0 145,364 + +2.6 145,412 - Dshi_0145 0.31 -3.8 145,522 + Dshi_0145 0.41 +1.0 145,726 + Dshi_0145 0.58 -1.6 146,384 - Dshi_0146 0.17 +2.3 146,509 - Dshi_0146 0.32 +2.0 146,531 - Dshi_0146 0.34 -0.5 146,600 - Dshi_0146 0.42 -0.2 146,625 + Dshi_0146 0.45 -1.0 146,725 - Dshi_0146 0.56 +1.0 146,783 - Dshi_0146 0.63 +0.4 147,023 + -0.0 147,398 - -2.0 147,904 - +1.8 147,995 + Dshi_0148 0.20 -1.8 148,081 + Dshi_0148 0.39 -2.5
Or see this region's nucleotide sequence