Experiment: Anaero. nitrate (e.a.), marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0103 and Dshi_0104 overlap by 4 nucleotides Dshi_0104 and Dshi_0105 are separated by 11 nucleotides Dshi_0105 and Dshi_0106 overlap by 4 nucleotides Dshi_0106 and Dshi_0107 are separated by 119 nucleotides
Dshi_0103: Dshi_0103 - Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq), at 102,930 to 104,042
_0103
Dshi_0104: Dshi_0104 - GCN5-related N-acetyltransferase (RefSeq), at 104,039 to 104,527
_0104
Dshi_0105: Dshi_0105 - protein of unknown function DUF88 (RefSeq), at 104,539 to 105,249
_0105
Dshi_0106: Dshi_0106 - transcriptional regulator, TetR family (RefSeq), at 105,246 to 105,869
_0106
Dshi_0107: Dshi_0107 - Rubrerythrin (RefSeq), at 105,989 to 106,960
_0107
Position (kb) 104
105
106 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 103.584 kb on + strand, within Dshi_0103 at 103.592 kb on - strand, within Dshi_0103 at 103.652 kb on + strand, within Dshi_0103 at 103.665 kb on + strand, within Dshi_0103 at 103.696 kb on - strand, within Dshi_0103 at 103.711 kb on + strand, within Dshi_0103 at 103.744 kb on - strand, within Dshi_0103 at 103.772 kb on - strand, within Dshi_0103 at 103.918 kb on + strand, within Dshi_0103 at 103.979 kb on + strand at 103.987 kb on - strand at 104.044 kb on - strand at 104.060 kb on + strand at 104.060 kb on + strand at 104.068 kb on - strand at 104.092 kb on - strand, within Dshi_0104 at 104.092 kb on - strand, within Dshi_0104 at 104.132 kb on - strand, within Dshi_0104 at 104.194 kb on + strand, within Dshi_0104 at 104.194 kb on - strand, within Dshi_0104 at 104.202 kb on - strand, within Dshi_0104 at 104.229 kb on + strand, within Dshi_0104 at 104.272 kb on - strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.310 kb on + strand, within Dshi_0104 at 104.388 kb on + strand, within Dshi_0104 at 104.489 kb on - strand at 104.647 kb on + strand, within Dshi_0105 at 104.666 kb on - strand, within Dshi_0105 at 104.666 kb on - strand, within Dshi_0105 at 104.694 kb on - strand, within Dshi_0105 at 104.731 kb on + strand, within Dshi_0105 at 104.830 kb on + strand, within Dshi_0105 at 104.867 kb on + strand, within Dshi_0105 at 104.960 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.114 kb on + strand, within Dshi_0105 at 105.152 kb on + strand, within Dshi_0105 at 105.160 kb on - strand, within Dshi_0105 at 105.160 kb on - strand, within Dshi_0105 at 105.197 kb on - strand at 105.256 kb on - strand at 105.256 kb on - strand at 105.348 kb on - strand, within Dshi_0106 at 105.350 kb on - strand, within Dshi_0106 at 105.357 kb on + strand, within Dshi_0106 at 105.360 kb on - strand, within Dshi_0106 at 105.380 kb on - strand, within Dshi_0106 at 105.432 kb on + strand, within Dshi_0106 at 105.432 kb on + strand, within Dshi_0106 at 105.507 kb on - strand, within Dshi_0106 at 105.546 kb on + strand, within Dshi_0106 at 105.670 kb on + strand, within Dshi_0106 at 105.787 kb on - strand, within Dshi_0106 at 105.879 kb on + strand at 105.884 kb on + strand at 105.889 kb on + strand at 105.927 kb on - strand at 106.083 kb on - strand at 106.220 kb on + strand, within Dshi_0107
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. nitrate (e.a.), marine broth remove 103,584 + Dshi_0103 0.59 +0.8 103,592 - Dshi_0103 0.59 +1.3 103,652 + Dshi_0103 0.65 -2.2 103,665 + Dshi_0103 0.66 -0.7 103,696 - Dshi_0103 0.69 +0.1 103,711 + Dshi_0103 0.70 +0.3 103,744 - Dshi_0103 0.73 +0.8 103,772 - Dshi_0103 0.76 -0.3 103,918 + Dshi_0103 0.89 -1.9 103,979 + -0.9 103,987 - -0.1 104,044 - -0.2 104,060 + +0.6 104,060 + +0.9 104,068 - -0.6 104,092 - Dshi_0104 0.11 +0.2 104,092 - Dshi_0104 0.11 -0.3 104,132 - Dshi_0104 0.19 -4.0 104,194 + Dshi_0104 0.32 -1.0 104,194 - Dshi_0104 0.32 +0.8 104,202 - Dshi_0104 0.33 +1.0 104,229 + Dshi_0104 0.39 -0.7 104,272 - Dshi_0104 0.48 +0.9 104,308 + Dshi_0104 0.55 +0.7 104,308 + Dshi_0104 0.55 -1.6 104,308 + Dshi_0104 0.55 +0.2 104,310 + Dshi_0104 0.55 -1.0 104,388 + Dshi_0104 0.71 -1.7 104,489 - +0.2 104,647 + Dshi_0105 0.15 -0.3 104,666 - Dshi_0105 0.18 +1.0 104,666 - Dshi_0105 0.18 -3.7 104,694 - Dshi_0105 0.22 -0.6 104,731 + Dshi_0105 0.27 -0.8 104,830 + Dshi_0105 0.41 +0.8 104,867 + Dshi_0105 0.46 +1.6 104,960 - Dshi_0105 0.59 +1.3 105,007 - Dshi_0105 0.66 -1.6 105,007 - Dshi_0105 0.66 -1.3 105,007 - Dshi_0105 0.66 +0.1 105,114 + Dshi_0105 0.81 +0.0 105,152 + Dshi_0105 0.86 -1.2 105,160 - Dshi_0105 0.87 +1.1 105,160 - Dshi_0105 0.87 +0.4 105,197 - -0.1 105,256 - +1.0 105,256 - +3.6 105,348 - Dshi_0106 0.16 +0.2 105,350 - Dshi_0106 0.17 -1.6 105,357 + Dshi_0106 0.18 +0.5 105,360 - Dshi_0106 0.18 -1.1 105,380 - Dshi_0106 0.21 -0.5 105,432 + Dshi_0106 0.30 -1.0 105,432 + Dshi_0106 0.30 -1.3 105,507 - Dshi_0106 0.42 -2.0 105,546 + Dshi_0106 0.48 -0.0 105,670 + Dshi_0106 0.68 -1.9 105,787 - Dshi_0106 0.87 +2.7 105,879 + +0.1 105,884 + -0.3 105,889 + -0.3 105,927 - +1.0 106,083 - -4.2 106,220 + Dshi_0107 0.24 +0.6
Or see this region's nucleotide sequence