Strain Fitness in Shewanella amazonensis SB2B around Sama_3619

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
4,258,420	+		Sama_3617	0.70	-2.5
4,258,420	+		Sama_3617	0.70	-3.0
4,258,421	-		Sama_3617	0.70	-2.1
4,258,434	+		Sama_3617	0.72	-2.7
4,258,497	+		Sama_3617	0.82	-3.3
4,258,497	+		Sama_3617	0.82	-2.5
4,258,498	-		Sama_3617	0.82	-4.1
4,258,512	+		Sama_3617	0.84	-3.3
4,258,512	+		Sama_3617	0.84	-3.1
4,258,513	-		Sama_3617	0.85	-1.6
4,258,602	+				-2.1
4,258,602	+				-3.0
4,258,602	+				-0.5
4,258,602	+				-3.4
4,258,603	-				-3.2
4,258,603	-				-4.2
4,258,603	-				-2.1
4,258,646	+				-0.3
4,258,706	+		Sama_3618	0.21	-1.0
4,258,707	-		Sama_3618	0.21	-0.0
4,258,707	-		Sama_3618	0.21	-1.0
4,258,808	+		Sama_3618	0.43	-3.0
4,258,808	+		Sama_3618	0.43	+0.0
4,258,808	+		Sama_3618	0.43	-1.6
4,258,809	-		Sama_3618	0.43	+1.6
4,258,809	-		Sama_3618	0.43	+1.9
4,258,826	+		Sama_3618	0.47	+0.2
4,258,827	-		Sama_3618	0.47	+0.8
4,258,855	+		Sama_3618	0.53	-1.1
4,258,855	+		Sama_3618	0.53	-2.0
4,258,855	+		Sama_3618	0.53	-4.0
4,258,855	+		Sama_3618	0.53	-3.1
4,258,855	+		Sama_3618	0.53	-0.5
4,258,855	+		Sama_3618	0.53	-2.0
4,258,855	+		Sama_3618	0.53	-3.2
4,258,856	-		Sama_3618	0.53	+1.2
4,258,856	-		Sama_3618	0.53	-0.1
4,258,856	-		Sama_3618	0.53	+0.2
4,258,856	-		Sama_3618	0.53	+1.5
4,258,856	-		Sama_3618	0.53	-0.4
4,258,856	-		Sama_3618	0.53	+0.9
4,258,868	+		Sama_3618	0.56	-1.4
4,258,869	-		Sama_3618	0.56	+1.3
4,258,874	+		Sama_3618	0.57	-2.7
4,258,874	+		Sama_3618	0.57	-2.0
4,258,875	-		Sama_3618	0.58	-0.6
4,258,875	-		Sama_3618	0.58	+0.5
4,258,912	+		Sama_3618	0.66	-1.4
4,258,912	+		Sama_3618	0.66	-2.6
4,258,912	+		Sama_3618	0.66	-2.5
4,258,912	+		Sama_3618	0.66	-1.3
4,258,913	-		Sama_3618	0.66	-0.3
4,258,913	-		Sama_3618	0.66	-0.5
4,258,913	-		Sama_3618	0.66	-0.5
4,258,913	-		Sama_3618	0.66	+0.2
4,259,038	+				-1.0
4,259,038	+				-0.3
4,259,038	+				-1.4
4,259,038	+				-2.5
4,259,038	+				-2.6
4,259,038	+				-2.3
4,259,038	+				-1.0
4,259,038	+				-1.6
4,259,038	+				-0.8
4,259,038	+				-2.9
4,259,038	+				-4.5
4,259,038	+				-2.0
4,259,038	+				-3.4
4,259,038	+				-2.1
4,259,038	+				-2.1
4,259,038	+				-0.8
4,259,038	+				-3.1
4,259,038	+				-2.1
4,259,038	+				-3.3
4,259,038	+				-2.0
4,259,038	+				-2.9
4,259,038	+				-2.7
4,259,038	+				-3.7
4,259,038	+				-2.3
4,259,038	+				-1.4
4,259,038	+				-3.3
4,259,039	-				+0.3
4,259,039	-				+1.7
4,259,039	-				+0.4
4,259,039	-				+0.1
4,259,039	-				+0.2
4,259,039	-				-0.1
4,259,039	-				+1.2
4,259,039	-				+0.3
4,259,039	-				+0.8
4,259,039	-				+1.6
4,259,039	-				-0.2
4,259,039	-				+0.5
4,259,039	-				+0.3
4,259,039	-				+0.2
4,259,039	-				-0.2
4,259,039	-				+1.1
4,259,039	-				+0.4
4,259,039	-				+0.8
4,259,039	-				+1.2
4,259,039	-				-0.1
4,259,039	-				-0.7
4,259,039	-				+0.9
4,259,039	-				+1.6
4,259,039	-				+1.2
4,259,039	-				+0.7
4,259,039	-				+0.5
4,259,039	-				+1.2
4,259,039	-				+0.2
4,259,039	-				+0.8
4,259,190	+				-2.0
4,259,190	+				+0.8
4,259,190	+				-0.1
4,259,191	-				+0.7
4,259,194	+				-1.8
4,259,195	-				-0.2
4,259,234	+				-1.1
4,259,234	+				-1.4
4,259,234	+				-0.9
4,259,234	+				-1.0
4,259,234	+				-0.9
4,259,234	+				-0.2
4,259,234	+				-1.4
4,259,235	-				-0.3
4,259,235	-				+0.4
4,259,235	-				-0.2
4,259,235	-				-0.4
4,259,235	-				-0.0
4,259,235	-				-0.0
4,259,299	+				-0.0
4,259,299	+				-0.5
4,259,299	+				-0.1
4,259,300	-				-0.5
4,259,300	-				+1.2
4,259,300	-				-0.0
4,259,300	-				+2.8
4,259,304	+				+1.2
4,259,304	+				+0.1
4,259,305	-				-0.7
4,259,305	-				-0.5
4,259,305	-				-0.1
4,259,311	+				-0.0
4,259,323	+				-1.7
4,259,323	+				-0.6
4,259,323	+				+0.1
4,259,324	-				-2.6
4,259,324	-				-1.3
4,259,324	-				-2.3
4,259,328	+				-1.1
4,259,329	-				+0.6
4,259,402	+				-2.9
4,259,482	+		Sama_3619	0.16	-2.3
4,259,482	+		Sama_3619	0.16	-2.4
4,259,482	+		Sama_3619	0.16	-3.1
4,259,483	-		Sama_3619	0.16	-3.2
4,259,487	+		Sama_3619	0.16	-2.7
4,259,487	+		Sama_3619	0.16	-0.8
4,259,487	+		Sama_3619	0.16	-0.8
4,259,488	-		Sama_3619	0.17	-4.4
4,259,488	-		Sama_3619	0.17	-2.5
4,259,488	-		Sama_3619	0.17	-3.7
4,259,502	-		Sama_3619	0.18	-2.3
4,259,502	-		Sama_3619	0.18	-2.8
4,259,502	-		Sama_3619	0.18	-0.6
4,259,502	-		Sama_3619	0.18	-3.0
4,259,551	+		Sama_3619	0.24	-3.3
4,259,716	+		Sama_3619	0.43	-1.8
4,259,716	+		Sama_3619	0.43	-4.0
4,259,716	+		Sama_3619	0.43	-2.1
4,259,717	-		Sama_3619	0.44	-1.6
4,259,717	-		Sama_3619	0.44	-2.6
4,259,812	+		Sama_3619	0.55	-0.0
4,259,826	+		Sama_3619	0.56	-2.0
4,259,827	-		Sama_3619	0.57	-2.2
4,259,827	-		Sama_3619	0.57	-2.7
4,259,876	+		Sama_3619	0.62	-2.4
4,259,876	+		Sama_3619	0.62	-3.4
4,259,876	+		Sama_3619	0.62	-2.1
4,259,876	+		Sama_3619	0.62	-2.7
4,259,877	-		Sama_3619	0.62	-2.1
4,259,877	-		Sama_3619	0.62	-2.7
4,259,877	-		Sama_3619	0.62	-1.8
4,259,877	-		Sama_3619	0.62	-3.5
4,259,877	-		Sama_3619	0.62	-2.6
4,259,877	-		Sama_3619	0.62	-3.3
4,259,877	-		Sama_3619	0.62	-2.4
4,259,915	+		Sama_3619	0.67	-2.6
4,259,916	-		Sama_3619	0.67	-0.8
4,259,943	-		Sama_3619	0.70	-1.7
4,259,974	+		Sama_3619	0.74	-0.8
4,259,977	-		Sama_3619	0.74	-0.8
4,260,008	+		Sama_3619	0.78	-4.4
4,260,009	-		Sama_3619	0.78	-3.4
4,260,009	-		Sama_3619	0.78	-2.5
4,260,029	+		Sama_3619	0.80	-4.6
4,260,029	+		Sama_3619	0.80	-2.0
4,260,029	+		Sama_3619	0.80	-2.7
4,260,029	+		Sama_3619	0.80	-3.4
4,260,029	+		Sama_3619	0.80	-2.6
4,260,029	+		Sama_3619	0.80	-1.9
4,260,029	+		Sama_3619	0.80	-5.0
4,260,029	+		Sama_3619	0.80	-3.7
4,260,029	+		Sama_3619	0.80	-0.6
4,260,030	-		Sama_3619	0.80	-1.8
4,260,030	-		Sama_3619	0.80	-0.8
4,260,030	-		Sama_3619	0.80	-0.6
4,260,030	-		Sama_3619	0.80	-1.6
4,260,030	-		Sama_3619	0.80	-3.1
4,260,030	-		Sama_3619	0.80	-3.1
4,260,035	+		Sama_3619	0.81	+0.2
4,260,035	+		Sama_3619	0.81	-2.8
4,260,035	+		Sama_3619	0.81	-0.4
4,260,035	+		Sama_3619	0.81	-2.3
4,260,036	-		Sama_3619	0.81	-2.8
4,260,036	-		Sama_3619	0.81	-3.7
4,260,036	-		Sama_3619	0.81	-2.7
4,260,134	+				-2.0
4,260,135	-				-4.0
4,260,135	-				-3.2
4,260,136	+				-1.8
4,260,136	+				-2.9
4,260,136	+				-2.0
4,260,136	+				-1.1
4,260,136	+				-2.9
4,260,136	+				+0.6
4,260,136	+				-3.7
4,260,136	+				-2.8
4,260,137	-				-2.3
4,260,137	-				-1.6
4,260,137	-				-3.6
4,260,137	-				-3.0
4,260,137	-				-3.0
4,260,137	-				-1.8
4,260,137	-				-2.2
4,260,156	-				-3.5
4,260,156	-				-0.8
4,260,193	+				+0.1
4,260,193	+				-0.3
4,260,193	+				-1.1
4,260,193	+				-0.8
4,260,219	+				+1.2
4,260,219	+				-0.5
4,260,219	+				-1.1
4,260,219	+				+0.2
4,260,219	+				-2.4
4,260,219	+				-0.1
4,260,219	+				-0.2
4,260,219	+				-1.1
4,260,219	+				-0.2
4,260,219	+				-1.6
4,260,219	+				+0.6
4,260,219	+				+0.0
4,260,219	+				-0.2
4,260,219	+				-1.1
4,260,219	+				-0.6
4,260,219	+				-0.5
4,260,219	+				+0.7
4,260,220	-				-0.1
4,260,220	-				-1.0
4,260,220	-				-1.6
4,260,220	-				-0.1
4,260,220	-				-0.4
4,260,220	-				-0.4
4,260,220	-				+0.6
4,260,220	-				-0.6
4,260,220	-				-0.6
4,260,220	-				-0.6
4,260,220	-				-0.6
4,260,220	-				-0.4
4,260,220	-				-0.0
4,260,220	-				-0.6
4,260,221	+				+0.2
4,260,221	+				+1.2
4,260,221	+				-0.8
4,260,221	+				-1.1
4,260,221	+				+0.1
4,260,221	+				+0.4
4,260,222	-				-0.5
4,260,222	-				-0.1
4,260,222	-				-0.5
4,260,222	-				+0.6
4,260,222	-				-0.4
4,260,222	-				+2.2
4,260,222	-				+0.0
4,260,246	+				-0.6
4,260,274	-				-0.7
4,260,293	+		Sama_3620	0.11	-0.8
4,260,294	-		Sama_3620	0.11	-1.0
4,260,358	+		Sama_3620	0.18	+0.4
4,260,374	+		Sama_3620	0.20	+0.1
4,260,460	+		Sama_3620	0.29	-0.7
4,260,460	+		Sama_3620	0.29	+0.5
4,260,483	+		Sama_3620	0.32	-0.2
4,260,484	-		Sama_3620	0.32	-0.9
4,260,484	-		Sama_3620	0.32	+0.0
4,260,532	-		Sama_3620	0.37	-1.1
4,260,545	+		Sama_3620	0.39	-0.2
4,260,546	-		Sama_3620	0.39	-0.4
4,260,546	-		Sama_3620	0.39	-1.0
4,260,546	-		Sama_3620	0.39	-0.3
4,260,587	+		Sama_3620	0.43	-0.6
4,260,598	+		Sama_3620	0.44	-1.5
4,260,598	+		Sama_3620	0.44	-0.8
4,260,599	-		Sama_3620	0.44	-1.4
4,260,629	-		Sama_3620	0.48	-1.4
4,260,629	-		Sama_3620	0.48	-2.3
4,260,642	+		Sama_3620	0.49	+0.0
4,260,643	-		Sama_3620	0.49	-1.0
4,260,643	-		Sama_3620	0.49	+0.4
4,260,664	+		Sama_3620	0.52	-1.1
4,260,664	+		Sama_3620	0.52	-1.5
4,260,664	+		Sama_3620	0.52	-0.1
4,260,665	-		Sama_3620	0.52	+1.2
4,260,665	-		Sama_3620	0.52	-0.8
4,260,734	-		Sama_3620	0.59	-0.4
4,260,734	-		Sama_3620	0.59	-0.7
4,260,796	+		Sama_3620	0.66	-2.9
4,260,796	+		Sama_3620	0.66	-0.7
4,260,855	+		Sama_3620	0.73	-1.5
4,260,855	+		Sama_3620	0.73	-1.4
4,260,855	+		Sama_3620	0.73	-0.7
4,260,855	+		Sama_3620	0.73	+0.5
4,260,855	+		Sama_3620	0.73	+0.3
4,260,855	+		Sama_3620	0.73	-0.2
4,260,856	-		Sama_3620	0.73	+0.0
4,260,856	-		Sama_3620	0.73	-0.4
4,260,856	-		Sama_3620	0.73	-0.1
4,260,856	-		Sama_3620	0.73	+0.2
4,260,856	-		Sama_3620	0.73	+0.2
4,260,857	+		Sama_3620	0.73	-0.9
4,260,857	+		Sama_3620	0.73	-0.9
4,260,857	+		Sama_3620	0.73	-0.4
4,260,857	+		Sama_3620	0.73	-0.3
4,260,857	+		Sama_3620	0.73	+0.2
4,260,857	+		Sama_3620	0.73	-1.0
4,260,857	+		Sama_3620	0.73	+1.2
4,260,857	+		Sama_3620	0.73	-0.3
4,260,857	+		Sama_3620	0.73	+0.6
4,260,858	-		Sama_3620	0.73	-0.5
4,260,858	-		Sama_3620	0.73	-0.8
4,260,858	-		Sama_3620	0.73	-1.6
4,260,858	-		Sama_3620	0.73	-1.8
4,260,858	-		Sama_3620	0.73	-1.2
4,260,858	-		Sama_3620	0.73	-2.5
4,260,858	-		Sama_3620	0.73	+0.5
4,260,858	-		Sama_3620	0.73	-0.7
4,260,859	+		Sama_3620	0.73	+0.4
4,260,859	+		Sama_3620	0.73	-1.0
4,260,859	+		Sama_3620	0.73	-1.4
4,260,859	+		Sama_3620	0.73	+0.2
4,260,859	+		Sama_3620	0.73	+0.6
4,260,975	+		Sama_3620	0.86	-0.7
4,260,975	+		Sama_3620	0.86	-0.6
4,260,976	-		Sama_3620	0.86	+0.1
4,260,976	-		Sama_3620	0.86	+0.3
4,260,976	-		Sama_3620	0.86	-1.1
4,260,976	-		Sama_3620	0.86	-1.0
4,260,991	+		Sama_3620	0.88	-1.3
4,260,991	+		Sama_3620	0.88	-0.4
4,260,991	+		Sama_3620	0.88	-0.0
4,261,036	+				-0.3
4,261,036	+				+0.3
4,261,056	+				-0.1
4,261,056	+				-0.8
4,261,063	+				+0.5
4,261,063	+				-0.1
4,261,064	-				-2.0
4,261,064	-				-2.1
4,261,064	-				-0.5
4,261,064	-				-2.6
4,261,064	-				-0.6
4,261,101	+				+0.2
4,261,101	+				-0.1
4,261,101	+				-1.2
4,261,102	-				-1.0
4,261,102	-				-1.3
4,261,102	-				+0.2
4,261,102	-				-0.8
4,261,102	-				+0.6
4,261,167	+				+0.1
4,261,167	+				-1.6
4,261,167	+				-0.5
4,261,167	+				+0.2
4,261,168	-				-0.1
4,261,168	-				+0.6