Strain Fitness in Shewanella amazonensis SB2B around Sama_3616

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
4,255,181	+				-0.4
4,255,181	+				-0.9
4,255,181	+				-3.1
4,255,181	+				-4.6
4,255,181	+				-1.4
4,255,181	+				-1.6
4,255,182	-				-1.4
4,255,182	-				-2.3
4,255,182	-				-1.0
4,255,182	-				-3.7
4,255,202	-				-2.0
4,255,202	-				-1.7
4,255,229	-		Sama_3614	0.10	-2.3
4,255,231	+		Sama_3614	0.11	-0.8
4,255,231	+		Sama_3614	0.11	-3.3
4,255,231	+		Sama_3614	0.11	-1.5
4,255,231	+		Sama_3614	0.11	-2.6
4,255,232	-		Sama_3614	0.12	-3.0
4,255,232	-		Sama_3614	0.12	-0.7
4,255,232	-		Sama_3614	0.12	-1.7
4,255,232	-		Sama_3614	0.12	-0.8
4,255,241	+		Sama_3614	0.16	-1.1
4,255,241	+		Sama_3614	0.16	-2.5
4,255,242	-		Sama_3614	0.17	-2.2
4,255,258	+		Sama_3614	0.25	-3.6
4,255,305	-		Sama_3614	0.49	-2.5
4,255,305	-		Sama_3614	0.49	-0.8
4,255,494	+				-1.5
4,255,494	+				-1.1
4,255,495	-				+1.7
4,255,495	-				+0.2
4,255,495	-				+0.7
4,255,495	-				+0.9
4,255,553	+				-0.4
4,255,554	-				+0.7
4,255,554	-				+0.5
4,255,554	-				+0.0
4,255,635	+		Sama_3615	0.21	+0.2
4,255,635	+		Sama_3615	0.21	-3.5
4,255,636	-		Sama_3615	0.21	-3.0
4,255,636	-		Sama_3615	0.21	-1.4
4,255,707	+		Sama_3615	0.32	-1.1
4,255,708	-		Sama_3615	0.32	-1.6
4,255,708	-		Sama_3615	0.32	-1.3
4,255,726	-		Sama_3615	0.35	-2.5
4,255,744	+		Sama_3615	0.38	-3.7
4,255,745	-		Sama_3615	0.38	-2.0
4,255,880	-		Sama_3615	0.58	-2.1
4,255,880	-		Sama_3615	0.58	-2.3
4,255,894	-		Sama_3615	0.60	-0.4
4,255,938	+		Sama_3615	0.67	-2.1
4,255,938	+		Sama_3615	0.67	-1.3
4,255,939	-		Sama_3615	0.67	-1.1
4,255,939	-		Sama_3615	0.67	-2.8
4,255,939	-		Sama_3615	0.67	-2.5
4,255,939	-		Sama_3615	0.67	-2.9
4,256,045	+		Sama_3615	0.83	-3.2
4,256,103	+				-1.2
4,256,103	+				-3.7
4,256,103	+				-3.0
4,256,103	+				-3.3
4,256,103	+				-3.2
4,256,103	+				-1.3
4,256,103	+				-0.2
4,256,103	+				-2.0
4,256,103	+				-0.8
4,256,103	+				-2.0
4,256,103	+				-0.9
4,256,103	+				-1.6
4,256,103	+				-0.8
4,256,103	+				-4.3
4,256,103	+				-3.9
4,256,103	+				-2.6
4,256,103	+				-2.9
4,256,103	+				-0.4
4,256,103	+				-3.1
4,256,103	+				-2.4
4,256,103	+				-0.4
4,256,104	-				-2.1
4,256,104	-				-2.1
4,256,104	-				-4.6
4,256,104	-				-2.4
4,256,104	-				-0.5
4,256,104	-				-1.6
4,256,104	-				-1.3
4,256,104	-				-4.6
4,256,104	-				+0.2
4,256,104	-				-2.5
4,256,104	-				-0.9
4,256,104	-				-0.5
4,256,104	-				-2.7
4,256,104	-				-1.0
4,256,104	-				-1.8
4,256,104	-				-1.9
4,256,104	-				-1.5
4,256,104	-				-3.6
4,256,105	+				-2.1
4,256,105	+				-3.0
4,256,105	+				-3.6
4,256,105	+				-2.4
4,256,105	+				-1.6
4,256,105	+				-1.4
4,256,105	+				-2.4
4,256,105	+				-3.3
4,256,105	+				-0.6
4,256,105	+				-3.3
4,256,105	+				-2.6
4,256,105	+				-3.0
4,256,105	+				-2.1
4,256,105	+				-2.0
4,256,105	+				-3.3
4,256,105	+				-1.1
4,256,105	+				-3.1
4,256,105	+				-2.1
4,256,105	+				-2.3
4,256,105	+				-0.4
4,256,105	+				-0.8
4,256,105	+				-3.2
4,256,105	+				-2.9
4,256,105	+				-2.9
4,256,105	+				-0.8
4,256,105	+				-4.1
4,256,105	+				+1.2
4,256,106	-				-3.1
4,256,106	-				-2.1
4,256,106	-				-0.7
4,256,106	-				-3.3
4,256,106	-				-2.8
4,256,106	-				-1.3
4,256,106	-				-2.1
4,256,106	-				-0.6
4,256,106	-				-0.2
4,256,106	-				-2.6
4,256,106	-				-2.7
4,256,106	-				-1.4
4,256,106	-				-2.7
4,256,106	-				-0.7
4,256,106	-				-0.7
4,256,106	-				-2.4
4,256,106	-				-2.7
4,256,106	-				-2.4
4,256,106	-				-2.0
4,256,106	-				-3.3
4,256,106	-				-3.5
4,256,106	-				-1.6
4,256,106	-				-2.1
4,256,106	-				-2.4
4,256,106	-				-4.4
4,256,106	-				-2.1
4,256,106	-				-4.2
4,256,106	-				-3.0
4,256,106	-				-2.3
4,256,106	-				-2.7
4,256,106	-				-0.4
4,256,106	-				-0.8
4,256,106	-				-2.3
4,256,106	-				-2.1
4,256,106	-				-3.6
4,256,135	+				-1.8
4,256,135	+				-1.8
4,256,135	+				-2.0
4,256,135	+				+1.2
4,256,135	+				-3.3
4,256,146	+				-3.1
4,256,146	+				-2.0
4,256,146	+				-3.1
4,256,147	-				-2.7
4,256,147	-				-2.3
4,256,158	+				-1.8
4,256,158	+				-2.9
4,256,159	-				-0.5
4,256,170	+				-3.1
4,256,170	+				-1.8
4,256,171	-				+1.2
4,256,171	-				-0.1
4,256,171	-				-0.2
4,256,289	-				-4.6
4,256,370	+		Sama_3616	0.12	-2.4
4,256,426	+		Sama_3616	0.15	-4.6
4,256,427	-		Sama_3616	0.15	-2.8
4,256,427	-		Sama_3616	0.15	-2.2
4,256,537	+		Sama_3616	0.21	-1.8
4,256,537	+		Sama_3616	0.21	-2.8
4,256,537	+		Sama_3616	0.21	-3.8
4,256,538	-		Sama_3616	0.21	-1.8
4,256,552	+		Sama_3616	0.22	-0.8
4,256,552	+		Sama_3616	0.22	+0.2
4,256,552	+		Sama_3616	0.22	-1.6
4,256,552	+		Sama_3616	0.22	-3.9
4,256,552	+		Sama_3616	0.22	-1.3
4,256,552	+		Sama_3616	0.22	-2.0
4,256,553	-		Sama_3616	0.22	-2.0
4,256,553	-		Sama_3616	0.22	-2.0
4,256,553	-		Sama_3616	0.22	-2.7
4,256,553	-		Sama_3616	0.22	-1.9
4,256,553	-		Sama_3616	0.22	-4.1
4,256,553	-		Sama_3616	0.22	-1.8
4,256,553	-		Sama_3616	0.22	-2.3
4,256,553	-		Sama_3616	0.22	-1.4
4,256,553	-		Sama_3616	0.22	-2.1
4,256,553	-		Sama_3616	0.22	-1.8
4,256,553	-		Sama_3616	0.22	-3.2
4,256,553	-		Sama_3616	0.22	-2.4
4,256,553	-		Sama_3616	0.22	-0.7
4,256,553	-		Sama_3616	0.22	-3.9
4,256,553	-		Sama_3616	0.22	-2.6
4,256,567	+		Sama_3616	0.23	-1.4
4,256,568	-		Sama_3616	0.23	-1.1
4,256,665	+		Sama_3616	0.28	-2.6
4,256,665	+		Sama_3616	0.28	-2.0
4,256,666	-		Sama_3616	0.29	-1.1
4,256,732	+		Sama_3616	0.32	-1.4
4,256,876	+		Sama_3616	0.41	-4.8
4,256,877	-		Sama_3616	0.41	-2.1
4,257,118	+		Sama_3616	0.54	-3.1
4,257,119	-		Sama_3616	0.55	-2.1
4,257,149	+		Sama_3616	0.56	-0.3
4,257,149	+		Sama_3616	0.56	-1.4
4,257,150	-		Sama_3616	0.56	+0.2
4,257,175	+		Sama_3616	0.58	-2.2
4,257,176	-		Sama_3616	0.58	-1.4
4,257,176	-		Sama_3616	0.58	-2.4
4,257,176	-		Sama_3616	0.58	-2.3
4,257,176	-		Sama_3616	0.58	-2.6
4,257,176	-		Sama_3616	0.58	-1.4
4,257,176	-		Sama_3616	0.58	-1.6
4,257,302	-		Sama_3616	0.65	-2.5
4,257,444	+		Sama_3616	0.73	-2.2
4,257,444	+		Sama_3616	0.73	-2.7
4,257,444	+		Sama_3616	0.73	-0.4
4,257,444	+		Sama_3616	0.73	-2.8
4,257,444	+		Sama_3616	0.73	-3.6
4,257,444	+		Sama_3616	0.73	-1.3
4,257,444	+		Sama_3616	0.73	-3.1
4,257,444	+		Sama_3616	0.73	-2.8
4,257,444	+		Sama_3616	0.73	-3.1
4,257,445	-		Sama_3616	0.73	-3.3
4,257,445	-		Sama_3616	0.73	-4.5
4,257,445	-		Sama_3616	0.73	-1.6
4,257,445	-		Sama_3616	0.73	-1.8
4,257,445	-		Sama_3616	0.73	-1.4
4,257,445	-		Sama_3616	0.73	-3.5
4,257,445	-		Sama_3616	0.73	-2.7
4,257,476	+		Sama_3616	0.75	-1.9
4,257,512	+		Sama_3616	0.77	-2.3
4,257,559	+		Sama_3616	0.80	-4.4
4,257,559	+		Sama_3616	0.80	-0.9
4,257,559	+		Sama_3616	0.80	-2.8
4,257,559	+		Sama_3616	0.80	-2.4
4,257,562	+		Sama_3616	0.80	-2.0
4,257,562	+		Sama_3616	0.80	-2.0
4,257,562	+		Sama_3616	0.80	-1.6
4,257,562	+		Sama_3616	0.80	-2.8
4,257,562	+		Sama_3616	0.80	-1.5
4,257,562	+		Sama_3616	0.80	+0.2
4,257,563	-		Sama_3616	0.80	-2.0
4,257,563	-		Sama_3616	0.80	-2.9
4,257,563	-		Sama_3616	0.80	-2.4
4,257,563	-		Sama_3616	0.80	-2.7
4,257,563	-		Sama_3616	0.80	-1.9
4,257,627	-		Sama_3616	0.84	-2.7
4,257,627	-		Sama_3616	0.84	-1.4
4,257,627	-		Sama_3616	0.84	-3.1
4,257,710	+		Sama_3616	0.88	-1.5
4,257,710	+		Sama_3616	0.88	-3.2
4,257,711	-		Sama_3616	0.88	-0.9
4,257,711	-		Sama_3616	0.88	-2.5
4,257,711	-		Sama_3616	0.88	-1.4
4,257,711	-		Sama_3616	0.88	-2.7
4,257,711	-		Sama_3616	0.88	-1.1
4,257,711	-		Sama_3616	0.88	-2.4
4,257,733	+		Sama_3616	0.90	-2.3
4,257,733	+		Sama_3616	0.90	-1.1
4,257,733	+		Sama_3616	0.90	+0.4
4,257,734	-		Sama_3616	0.90	-3.0
4,257,783	+				-2.9
4,257,784	-				-2.3
4,257,784	-				-1.5
4,257,828	+				-2.7
4,257,828	+				-1.8
4,257,828	+				-1.1
4,257,829	-				-3.8
4,257,829	-				-1.5
4,257,829	-				-2.8
4,257,829	-				-2.3
4,257,878	+				-1.8
4,257,878	+				-3.8
4,257,878	+				-1.6
4,257,878	+				-3.8
4,257,878	+				+0.2
4,257,879	-				-1.5
4,257,879	-				+0.4
4,257,879	-				+0.4
4,257,879	-				+0.2
4,257,879	-				-1.1
4,257,900	+				-2.5
4,257,901	-				+1.2
4,257,932	+				-0.8
4,257,932	+				-2.7
4,257,933	-				+0.2
4,257,933	-				-0.4
4,257,936	+				-3.0
4,257,936	+				-1.5
4,257,936	+				-2.5
4,257,936	+				-2.7
4,257,950	+				-1.4
4,257,959	+				-4.2
4,257,960	-				+0.0
4,257,968	+				-0.2
4,257,969	-				+1.2
4,258,014	+				-1.0
4,258,014	+				-2.3
4,258,218	-		Sama_3617	0.39	-3.3
4,258,229	+		Sama_3617	0.41	-0.8
4,258,229	+		Sama_3617	0.41	-2.5
4,258,229	+		Sama_3617	0.41	-4.4
4,258,229	+		Sama_3617	0.41	-1.4
4,258,230	-		Sama_3617	0.41	-3.9
4,258,230	-		Sama_3617	0.41	-2.8
4,258,230	-		Sama_3617	0.41	-3.6
4,258,248	+		Sama_3617	0.44	-1.5
4,258,249	-		Sama_3617	0.44	-2.9
4,258,249	-		Sama_3617	0.44	-2.4
4,258,256	+		Sama_3617	0.45	-2.4
4,258,256	+		Sama_3617	0.45	-2.0
4,258,256	+		Sama_3617	0.45	-2.1
4,258,256	+		Sama_3617	0.45	-0.3
4,258,257	-		Sama_3617	0.45	-3.8
4,258,257	-		Sama_3617	0.45	-1.0
4,258,257	-		Sama_3617	0.45	-4.0
4,258,257	-		Sama_3617	0.45	-4.2
4,258,323	+		Sama_3617	0.55	-2.1
4,258,323	+		Sama_3617	0.55	-2.3
4,258,323	+		Sama_3617	0.55	-3.0
4,258,323	+		Sama_3617	0.55	-2.4
4,258,324	-		Sama_3617	0.55	-3.2
4,258,324	-		Sama_3617	0.55	-3.1
4,258,324	-		Sama_3617	0.55	-2.1
4,258,324	-		Sama_3617	0.55	-2.6
4,258,420	+		Sama_3617	0.70	-2.5
4,258,420	+		Sama_3617	0.70	-3.0
4,258,421	-		Sama_3617	0.70	-2.1
4,258,434	+		Sama_3617	0.72	-2.7
4,258,497	+		Sama_3617	0.82	-3.3
4,258,497	+		Sama_3617	0.82	-2.5
4,258,498	-		Sama_3617	0.82	-4.1
4,258,512	+		Sama_3617	0.84	-3.3
4,258,512	+		Sama_3617	0.84	-3.1
4,258,513	-		Sama_3617	0.85	-1.6
4,258,602	+				-2.1
4,258,602	+				-3.0
4,258,602	+				-0.5
4,258,602	+				-3.4
4,258,603	-				-3.2
4,258,603	-				-4.2
4,258,603	-				-2.1
4,258,646	+				-0.3
4,258,706	+		Sama_3618	0.21	-1.0
4,258,707	-		Sama_3618	0.21	-0.0
4,258,707	-		Sama_3618	0.21	-1.0
4,258,808	+		Sama_3618	0.43	-3.0
4,258,808	+		Sama_3618	0.43	+0.0
4,258,808	+		Sama_3618	0.43	-1.6
4,258,809	-		Sama_3618	0.43	+1.6
4,258,809	-		Sama_3618	0.43	+1.9
4,258,826	+		Sama_3618	0.47	+0.2
4,258,827	-		Sama_3618	0.47	+0.8
4,258,855	+		Sama_3618	0.53	-1.1
4,258,855	+		Sama_3618	0.53	-2.0
4,258,855	+		Sama_3618	0.53	-4.0
4,258,855	+		Sama_3618	0.53	-3.1
4,258,855	+		Sama_3618	0.53	-0.5
4,258,855	+		Sama_3618	0.53	-2.0
4,258,855	+		Sama_3618	0.53	-3.2
4,258,856	-		Sama_3618	0.53	+1.2
4,258,856	-		Sama_3618	0.53	-0.1
4,258,856	-		Sama_3618	0.53	+0.2
4,258,856	-		Sama_3618	0.53	+1.5
4,258,856	-		Sama_3618	0.53	-0.4
4,258,856	-		Sama_3618	0.53	+0.9
4,258,868	+		Sama_3618	0.56	-1.4
4,258,869	-		Sama_3618	0.56	+1.3
4,258,874	+		Sama_3618	0.57	-2.7
4,258,874	+		Sama_3618	0.57	-2.0
4,258,875	-		Sama_3618	0.58	-0.6
4,258,875	-		Sama_3618	0.58	+0.5