Strain Fitness in Shewanella amazonensis SB2B around Sama_3614

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
4,254,257	+		Sama_3613	0.68	-1.4
4,254,257	+		Sama_3613	0.68	-3.0
4,254,258	-		Sama_3613	0.68	-2.7
4,254,258	-		Sama_3613	0.68	-3.5
4,254,258	-		Sama_3613	0.68	-0.4
4,254,266	+		Sama_3613	0.68	-2.4
4,254,266	+		Sama_3613	0.68	-1.9
4,254,266	+		Sama_3613	0.68	-3.6
4,254,267	-		Sama_3613	0.68	-0.4
4,254,271	+		Sama_3613	0.68	-1.7
4,254,271	+		Sama_3613	0.68	-2.7
4,254,271	+		Sama_3613	0.68	-1.1
4,254,272	-		Sama_3613	0.68	-2.0
4,254,272	-		Sama_3613	0.68	-2.1
4,254,273	+		Sama_3613	0.68	-1.5
4,254,273	+		Sama_3613	0.68	-3.3
4,254,274	-		Sama_3613	0.68	-2.8
4,254,274	-		Sama_3613	0.68	-4.8
4,254,274	-		Sama_3613	0.68	-3.0
4,254,287	+		Sama_3613	0.69	-2.3
4,254,288	-		Sama_3613	0.69	-2.6
4,254,320	+		Sama_3613	0.70	-3.1
4,254,320	+		Sama_3613	0.70	-1.0
4,254,320	+		Sama_3613	0.70	-3.2
4,254,321	-		Sama_3613	0.70	-2.0
4,254,321	-		Sama_3613	0.70	-3.3
4,254,337	+		Sama_3613	0.70	-3.0
4,254,337	+		Sama_3613	0.70	-1.4
4,254,337	+		Sama_3613	0.70	-2.7
4,254,337	+		Sama_3613	0.70	-1.6
4,254,337	+		Sama_3613	0.70	+0.2
4,254,337	+		Sama_3613	0.70	-3.6
4,254,338	-		Sama_3613	0.70	-2.2
4,254,338	-		Sama_3613	0.70	-3.3
4,254,338	-		Sama_3613	0.70	-1.1
4,254,338	-		Sama_3613	0.70	-0.9
4,254,338	-		Sama_3613	0.70	-2.7
4,254,338	-		Sama_3613	0.70	-2.0
4,254,338	-		Sama_3613	0.70	-5.4
4,254,368	+		Sama_3613	0.72	-2.3
4,254,368	+		Sama_3613	0.72	-3.7
4,254,369	-		Sama_3613	0.72	-1.0
4,254,376	+		Sama_3613	0.72	-2.3
4,254,376	+		Sama_3613	0.72	-3.0
4,254,376	+		Sama_3613	0.72	-2.2
4,254,376	+		Sama_3613	0.72	-2.1
4,254,376	+		Sama_3613	0.72	-2.5
4,254,377	-		Sama_3613	0.72	-4.1
4,254,377	-		Sama_3613	0.72	-0.2
4,254,377	-		Sama_3613	0.72	-2.1
4,254,377	-		Sama_3613	0.72	-2.7
4,254,377	-		Sama_3613	0.72	-1.4
4,254,377	-		Sama_3613	0.72	-3.1
4,254,398	+		Sama_3613	0.73	-2.3
4,254,399	-		Sama_3613	0.73	-2.6
4,254,446	+		Sama_3613	0.74	-1.3
4,254,446	+		Sama_3613	0.74	-2.7
4,254,447	-		Sama_3613	0.74	-2.4
4,254,504	-		Sama_3613	0.76	-4.3
4,254,560	-		Sama_3613	0.78	-1.1
4,254,560	-		Sama_3613	0.78	-2.3
4,254,605	+		Sama_3613	0.80	-2.5
4,254,605	+		Sama_3613	0.80	-2.5
4,254,605	+		Sama_3613	0.80	-3.4
4,254,605	+		Sama_3613	0.80	-3.3
4,254,605	+		Sama_3613	0.80	-4.1
4,254,605	+		Sama_3613	0.80	-1.8
4,254,605	+		Sama_3613	0.80	-1.0
4,254,664	+		Sama_3613	0.82	-3.5
4,254,664	+		Sama_3613	0.82	-2.4
4,254,664	+		Sama_3613	0.82	-2.7
4,254,664	+		Sama_3613	0.82	-1.4
4,254,664	+		Sama_3613	0.82	-5.4
4,254,664	+		Sama_3613	0.82	-2.8
4,254,664	+		Sama_3613	0.82	-2.6
4,254,665	-		Sama_3613	0.82	-2.3
4,254,665	-		Sama_3613	0.82	+0.2
4,254,665	-		Sama_3613	0.82	+0.2
4,254,665	-		Sama_3613	0.82	-0.4
4,254,665	-		Sama_3613	0.82	-1.3
4,254,665	-		Sama_3613	0.82	-1.0
4,254,665	-		Sama_3613	0.82	-3.5
4,254,703	+		Sama_3613	0.83	-1.2
4,254,703	+		Sama_3613	0.83	-1.6
4,254,704	-		Sama_3613	0.83	-3.2
4,254,704	-		Sama_3613	0.83	+1.2
4,254,794	+		Sama_3613	0.86	-2.5
4,254,817	+		Sama_3613	0.87	-1.1
4,254,817	+		Sama_3613	0.87	-2.9
4,254,818	-		Sama_3613	0.87	-1.6
4,254,936	+				-1.9
4,254,936	+				-2.3
4,254,937	-				-3.3
4,254,937	-				-2.5
4,254,946	+				-3.6
4,254,946	+				-1.4
4,254,947	-				-4.0
4,254,947	-				-2.7
4,254,947	-				-4.9
4,254,947	-				-1.5
4,254,950	+				+0.2
4,254,951	-				-1.1
4,254,983	+				-3.2
4,254,983	+				-1.4
4,254,983	+				-3.1
4,254,984	-				-2.0
4,255,181	+				-0.4
4,255,181	+				-0.9
4,255,181	+				-3.1
4,255,181	+				-4.6
4,255,181	+				-1.4
4,255,181	+				-1.6
4,255,182	-				-1.4
4,255,182	-				-2.3
4,255,182	-				-1.0
4,255,182	-				-3.7
4,255,202	-				-2.0
4,255,202	-				-1.7
4,255,229	-		Sama_3614	0.10	-2.3
4,255,231	+		Sama_3614	0.11	-0.8
4,255,231	+		Sama_3614	0.11	-3.3
4,255,231	+		Sama_3614	0.11	-1.5
4,255,231	+		Sama_3614	0.11	-2.6
4,255,232	-		Sama_3614	0.12	-3.0
4,255,232	-		Sama_3614	0.12	-0.7
4,255,232	-		Sama_3614	0.12	-1.7
4,255,232	-		Sama_3614	0.12	-0.8
4,255,241	+		Sama_3614	0.16	-1.1
4,255,241	+		Sama_3614	0.16	-2.5
4,255,242	-		Sama_3614	0.17	-2.2
4,255,258	+		Sama_3614	0.25	-3.6
4,255,305	-		Sama_3614	0.49	-2.5
4,255,305	-		Sama_3614	0.49	-0.8
4,255,494	+				-1.5
4,255,494	+				-1.1
4,255,495	-				+1.7
4,255,495	-				+0.2
4,255,495	-				+0.7
4,255,495	-				+0.9
4,255,553	+				-0.4
4,255,554	-				+0.7
4,255,554	-				+0.5
4,255,554	-				+0.0
4,255,635	+		Sama_3615	0.21	+0.2
4,255,635	+		Sama_3615	0.21	-3.5
4,255,636	-		Sama_3615	0.21	-3.0
4,255,636	-		Sama_3615	0.21	-1.4
4,255,707	+		Sama_3615	0.32	-1.1
4,255,708	-		Sama_3615	0.32	-1.6
4,255,708	-		Sama_3615	0.32	-1.3
4,255,726	-		Sama_3615	0.35	-2.5
4,255,744	+		Sama_3615	0.38	-3.7
4,255,745	-		Sama_3615	0.38	-2.0
4,255,880	-		Sama_3615	0.58	-2.1
4,255,880	-		Sama_3615	0.58	-2.3
4,255,894	-		Sama_3615	0.60	-0.4
4,255,938	+		Sama_3615	0.67	-2.1
4,255,938	+		Sama_3615	0.67	-1.3
4,255,939	-		Sama_3615	0.67	-1.1
4,255,939	-		Sama_3615	0.67	-2.8
4,255,939	-		Sama_3615	0.67	-2.5
4,255,939	-		Sama_3615	0.67	-2.9
4,256,045	+		Sama_3615	0.83	-3.2
4,256,103	+				-1.2
4,256,103	+				-3.7
4,256,103	+				-3.0
4,256,103	+				-3.3
4,256,103	+				-3.2
4,256,103	+				-1.3
4,256,103	+				-0.2
4,256,103	+				-2.0
4,256,103	+				-0.8
4,256,103	+				-2.0
4,256,103	+				-0.9
4,256,103	+				-1.6
4,256,103	+				-0.8
4,256,103	+				-4.3
4,256,103	+				-3.9
4,256,103	+				-2.6
4,256,103	+				-2.9
4,256,103	+				-0.4
4,256,103	+				-3.1
4,256,103	+				-2.4
4,256,103	+				-0.4
4,256,104	-				-2.1
4,256,104	-				-2.1
4,256,104	-				-4.6
4,256,104	-				-2.4
4,256,104	-				-0.5
4,256,104	-				-1.6
4,256,104	-				-1.3
4,256,104	-				-4.6
4,256,104	-				+0.2
4,256,104	-				-2.5
4,256,104	-				-0.9
4,256,104	-				-0.5
4,256,104	-				-2.7
4,256,104	-				-1.0
4,256,104	-				-1.8
4,256,104	-				-1.9
4,256,104	-				-1.5
4,256,104	-				-3.6
4,256,105	+				-2.1
4,256,105	+				-3.0
4,256,105	+				-3.6
4,256,105	+				-2.4
4,256,105	+				-1.6
4,256,105	+				-1.4
4,256,105	+				-2.4
4,256,105	+				-3.3
4,256,105	+				-0.6
4,256,105	+				-3.3
4,256,105	+				-2.6
4,256,105	+				-3.0
4,256,105	+				-2.1
4,256,105	+				-2.0
4,256,105	+				-3.3
4,256,105	+				-1.1
4,256,105	+				-3.1
4,256,105	+				-2.1
4,256,105	+				-2.3
4,256,105	+				-0.4
4,256,105	+				-0.8
4,256,105	+				-3.2
4,256,105	+				-2.9
4,256,105	+				-2.9
4,256,105	+				-0.8
4,256,105	+				-4.1
4,256,105	+				+1.2
4,256,106	-				-3.1
4,256,106	-				-2.1
4,256,106	-				-0.7
4,256,106	-				-3.3
4,256,106	-				-2.8
4,256,106	-				-1.3
4,256,106	-				-2.1
4,256,106	-				-0.6
4,256,106	-				-0.2
4,256,106	-				-2.6
4,256,106	-				-2.7
4,256,106	-				-1.4
4,256,106	-				-2.7
4,256,106	-				-0.7
4,256,106	-				-0.7
4,256,106	-				-2.4
4,256,106	-				-2.7
4,256,106	-				-2.4
4,256,106	-				-2.0
4,256,106	-				-3.3
4,256,106	-				-3.5
4,256,106	-				-1.6
4,256,106	-				-2.1
4,256,106	-				-2.4
4,256,106	-				-4.4
4,256,106	-				-2.1
4,256,106	-				-4.2
4,256,106	-				-3.0
4,256,106	-				-2.3
4,256,106	-				-2.7
4,256,106	-				-0.4
4,256,106	-				-0.8
4,256,106	-				-2.3
4,256,106	-				-2.1
4,256,106	-				-3.6
4,256,135	+				-1.8
4,256,135	+				-1.8
4,256,135	+				-2.0
4,256,135	+				+1.2
4,256,135	+				-3.3
4,256,146	+				-3.1
4,256,146	+				-2.0
4,256,146	+				-3.1
4,256,147	-				-2.7
4,256,147	-				-2.3
4,256,158	+				-1.8
4,256,158	+				-2.9
4,256,159	-				-0.5
4,256,170	+				-3.1
4,256,170	+				-1.8
4,256,171	-				+1.2
4,256,171	-				-0.1
4,256,171	-				-0.2
4,256,289	-				-4.6
4,256,370	+		Sama_3616	0.12	-2.4