Strain Fitness in Shewanella amazonensis SB2B around Sama_3614

Experiment: L-Lysine 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_3613 and Sama_3614 are separated by 30 nucleotidesSama_3614 and Sama_3615 are separated by 89 nucleotidesSama_3615 and Sama_3616 are separated by 10 nucleotides Sama_3613: Sama_3613 - formate dehydrogenase, alpha subunit (RefSeq), at 4,252,329 to 4,255,178 _3613 Sama_3614: Sama_3614 - hypothetical protein (RefSeq), at 4,255,209 to 4,255,403 _3614 Sama_3615: Sama_3615 - TorA specific chaperone, putative (RefSeq), at 4,255,493 to 4,256,158 _3615 Sama_3616: Sama_3616 - iron-sulfur cluster-binding protein (RefSeq), at 4,256,169 to 4,257,911 _3616 Position (kb) 4255 4256Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4254.257 kb on + strand, within Sama_3613at 4254.257 kb on + strand, within Sama_3613at 4254.258 kb on - strand, within Sama_3613at 4254.258 kb on - strand, within Sama_3613at 4254.258 kb on - strand, within Sama_3613at 4254.266 kb on + strand, within Sama_3613at 4254.266 kb on + strand, within Sama_3613at 4254.266 kb on + strand, within Sama_3613at 4254.267 kb on - strand, within Sama_3613at 4254.271 kb on + strand, within Sama_3613at 4254.271 kb on + strand, within Sama_3613at 4254.271 kb on + strand, within Sama_3613at 4254.272 kb on - strand, within Sama_3613at 4254.272 kb on - strand, within Sama_3613at 4254.273 kb on + strand, within Sama_3613at 4254.273 kb on + strand, within Sama_3613at 4254.274 kb on - strand, within Sama_3613at 4254.274 kb on - strand, within Sama_3613at 4254.274 kb on - strand, within Sama_3613at 4254.287 kb on + strand, within Sama_3613at 4254.288 kb on - strand, within Sama_3613at 4254.320 kb on + strand, within Sama_3613at 4254.320 kb on + strand, within Sama_3613at 4254.320 kb on + strand, within Sama_3613at 4254.321 kb on - strand, within Sama_3613at 4254.321 kb on - strand, within Sama_3613at 4254.337 kb on + strand, within Sama_3613at 4254.337 kb on + strand, within Sama_3613at 4254.337 kb on + strand, within Sama_3613at 4254.337 kb on + strand, within Sama_3613at 4254.337 kb on + strand, within Sama_3613at 4254.337 kb on + strand, within Sama_3613at 4254.338 kb on - strand, within Sama_3613at 4254.338 kb on - strand, within Sama_3613at 4254.338 kb on - strand, within Sama_3613at 4254.338 kb on - strand, within Sama_3613at 4254.338 kb on - strand, within Sama_3613at 4254.338 kb on - strand, within Sama_3613at 4254.338 kb on - strand, within Sama_3613at 4254.368 kb on + strand, within Sama_3613at 4254.368 kb on + strand, within Sama_3613at 4254.369 kb on - strand, within Sama_3613at 4254.376 kb on + strand, within Sama_3613at 4254.376 kb on + strand, within Sama_3613at 4254.376 kb on + strand, within Sama_3613at 4254.376 kb on + strand, within Sama_3613at 4254.376 kb on + strand, within Sama_3613at 4254.377 kb on - strand, within Sama_3613at 4254.377 kb on - strand, within Sama_3613at 4254.377 kb on - strand, within Sama_3613at 4254.377 kb on - strand, within Sama_3613at 4254.377 kb on - strand, within Sama_3613at 4254.377 kb on - strand, within Sama_3613at 4254.398 kb on + strand, within Sama_3613at 4254.399 kb on - strand, within Sama_3613at 4254.446 kb on + strand, within Sama_3613at 4254.446 kb on + strand, within Sama_3613at 4254.447 kb on - strand, within Sama_3613at 4254.504 kb on - strand, within Sama_3613at 4254.560 kb on - strand, within Sama_3613at 4254.560 kb on - strand, within Sama_3613at 4254.605 kb on + strand, within Sama_3613at 4254.605 kb on + strand, within Sama_3613at 4254.605 kb on + strand, within Sama_3613at 4254.605 kb on + strand, within Sama_3613at 4254.605 kb on + strand, within Sama_3613at 4254.605 kb on + strand, within Sama_3613at 4254.605 kb on + strand, within Sama_3613at 4254.664 kb on + strand, within Sama_3613at 4254.664 kb on + strand, within Sama_3613at 4254.664 kb on + strand, within Sama_3613at 4254.664 kb on + strand, within Sama_3613at 4254.664 kb on + strand, within Sama_3613at 4254.664 kb on + strand, within Sama_3613at 4254.664 kb on + strand, within Sama_3613at 4254.665 kb on - strand, within Sama_3613at 4254.665 kb on - strand, within Sama_3613at 4254.665 kb on - strand, within Sama_3613at 4254.665 kb on - strand, within Sama_3613at 4254.665 kb on - strand, within Sama_3613at 4254.665 kb on - strand, within Sama_3613at 4254.665 kb on - strand, within Sama_3613at 4254.703 kb on + strand, within Sama_3613at 4254.703 kb on + strand, within Sama_3613at 4254.704 kb on - strand, within Sama_3613at 4254.704 kb on - strand, within Sama_3613at 4254.794 kb on + strand, within Sama_3613at 4254.817 kb on + strand, within Sama_3613at 4254.817 kb on + strand, within Sama_3613at 4254.818 kb on - strand, within Sama_3613at 4254.936 kb on + strandat 4254.936 kb on + strandat 4254.937 kb on - strandat 4254.937 kb on - strandat 4254.946 kb on + strandat 4254.946 kb on + strandat 4254.947 kb on - strandat 4254.947 kb on - strandat 4254.947 kb on - strandat 4254.947 kb on - strandat 4254.950 kb on + strandat 4254.951 kb on - strandat 4254.983 kb on + strandat 4254.983 kb on + strandat 4254.983 kb on + strandat 4254.984 kb on - strandat 4255.181 kb on + strandat 4255.181 kb on + strandat 4255.181 kb on + strandat 4255.181 kb on + strandat 4255.181 kb on + strandat 4255.181 kb on + strandat 4255.182 kb on - strandat 4255.182 kb on - strandat 4255.182 kb on - strandat 4255.182 kb on - strandat 4255.202 kb on - strandat 4255.202 kb on - strandat 4255.229 kb on - strand, within Sama_3614at 4255.231 kb on + strand, within Sama_3614at 4255.231 kb on + strand, within Sama_3614at 4255.231 kb on + strand, within Sama_3614at 4255.231 kb on + strand, within Sama_3614at 4255.232 kb on - strand, within Sama_3614at 4255.232 kb on - strand, within Sama_3614at 4255.232 kb on - strand, within Sama_3614at 4255.232 kb on - strand, within Sama_3614at 4255.241 kb on + strand, within Sama_3614at 4255.241 kb on + strand, within Sama_3614at 4255.242 kb on - strand, within Sama_3614at 4255.258 kb on + strand, within Sama_3614at 4255.305 kb on - strand, within Sama_3614at 4255.305 kb on - strand, within Sama_3614at 4255.494 kb on + strandat 4255.494 kb on + strandat 4255.495 kb on - strandat 4255.495 kb on - strandat 4255.495 kb on - strandat 4255.495 kb on - strandat 4255.553 kb on + strandat 4255.554 kb on - strandat 4255.554 kb on - strandat 4255.554 kb on - strandat 4255.635 kb on + strand, within Sama_3615at 4255.635 kb on + strand, within Sama_3615at 4255.636 kb on - strand, within Sama_3615at 4255.636 kb on - strand, within Sama_3615at 4255.707 kb on + strand, within Sama_3615at 4255.708 kb on - strand, within Sama_3615at 4255.708 kb on - strand, within Sama_3615at 4255.726 kb on - strand, within Sama_3615at 4255.744 kb on + strand, within Sama_3615at 4255.745 kb on - strand, within Sama_3615at 4255.880 kb on - strand, within Sama_3615at 4255.880 kb on - strand, within Sama_3615at 4255.894 kb on - strand, within Sama_3615at 4255.938 kb on + strand, within Sama_3615at 4255.938 kb on + strand, within Sama_3615at 4255.939 kb on - strand, within Sama_3615at 4255.939 kb on - strand, within Sama_3615at 4255.939 kb on - strand, within Sama_3615at 4255.939 kb on - strand, within Sama_3615at 4256.045 kb on + strand, within Sama_3615at 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.103 kb on + strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.104 kb on - strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.105 kb on + strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.106 kb on - strandat 4256.135 kb on + strandat 4256.135 kb on + strandat 4256.135 kb on + strandat 4256.135 kb on + strandat 4256.135 kb on + strandat 4256.146 kb on + strandat 4256.146 kb on + strandat 4256.146 kb on + strandat 4256.147 kb on - strandat 4256.147 kb on - strandat 4256.158 kb on + strandat 4256.158 kb on + strandat 4256.159 kb on - strandat 4256.170 kb on + strandat 4256.170 kb on + strandat 4256.171 kb on - strandat 4256.171 kb on - strandat 4256.171 kb on - strandat 4256.289 kb on - strandat 4256.370 kb on + strand, within Sama_3616

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 200 mM
remove
4,254,257 + Sama_3613 0.68 -1.4
4,254,257 + Sama_3613 0.68 -3.0
4,254,258 - Sama_3613 0.68 -2.7
4,254,258 - Sama_3613 0.68 -3.5
4,254,258 - Sama_3613 0.68 -0.4
4,254,266 + Sama_3613 0.68 -2.4
4,254,266 + Sama_3613 0.68 -1.9
4,254,266 + Sama_3613 0.68 -3.6
4,254,267 - Sama_3613 0.68 -0.4
4,254,271 + Sama_3613 0.68 -1.7
4,254,271 + Sama_3613 0.68 -2.7
4,254,271 + Sama_3613 0.68 -1.1
4,254,272 - Sama_3613 0.68 -2.0
4,254,272 - Sama_3613 0.68 -2.1
4,254,273 + Sama_3613 0.68 -1.5
4,254,273 + Sama_3613 0.68 -3.3
4,254,274 - Sama_3613 0.68 -2.8
4,254,274 - Sama_3613 0.68 -4.8
4,254,274 - Sama_3613 0.68 -3.0
4,254,287 + Sama_3613 0.69 -2.3
4,254,288 - Sama_3613 0.69 -2.6
4,254,320 + Sama_3613 0.70 -3.1
4,254,320 + Sama_3613 0.70 -1.0
4,254,320 + Sama_3613 0.70 -3.2
4,254,321 - Sama_3613 0.70 -2.0
4,254,321 - Sama_3613 0.70 -3.3
4,254,337 + Sama_3613 0.70 -3.0
4,254,337 + Sama_3613 0.70 -1.4
4,254,337 + Sama_3613 0.70 -2.7
4,254,337 + Sama_3613 0.70 -1.6
4,254,337 + Sama_3613 0.70 +0.2
4,254,337 + Sama_3613 0.70 -3.6
4,254,338 - Sama_3613 0.70 -2.2
4,254,338 - Sama_3613 0.70 -3.3
4,254,338 - Sama_3613 0.70 -1.1
4,254,338 - Sama_3613 0.70 -0.9
4,254,338 - Sama_3613 0.70 -2.7
4,254,338 - Sama_3613 0.70 -2.0
4,254,338 - Sama_3613 0.70 -5.4
4,254,368 + Sama_3613 0.72 -2.3
4,254,368 + Sama_3613 0.72 -3.7
4,254,369 - Sama_3613 0.72 -1.0
4,254,376 + Sama_3613 0.72 -2.3
4,254,376 + Sama_3613 0.72 -3.0
4,254,376 + Sama_3613 0.72 -2.2
4,254,376 + Sama_3613 0.72 -2.1
4,254,376 + Sama_3613 0.72 -2.5
4,254,377 - Sama_3613 0.72 -4.1
4,254,377 - Sama_3613 0.72 -0.2
4,254,377 - Sama_3613 0.72 -2.1
4,254,377 - Sama_3613 0.72 -2.7
4,254,377 - Sama_3613 0.72 -1.4
4,254,377 - Sama_3613 0.72 -3.1
4,254,398 + Sama_3613 0.73 -2.3
4,254,399 - Sama_3613 0.73 -2.6
4,254,446 + Sama_3613 0.74 -1.3
4,254,446 + Sama_3613 0.74 -2.7
4,254,447 - Sama_3613 0.74 -2.4
4,254,504 - Sama_3613 0.76 -4.3
4,254,560 - Sama_3613 0.78 -1.1
4,254,560 - Sama_3613 0.78 -2.3
4,254,605 + Sama_3613 0.80 -2.5
4,254,605 + Sama_3613 0.80 -2.5
4,254,605 + Sama_3613 0.80 -3.4
4,254,605 + Sama_3613 0.80 -3.3
4,254,605 + Sama_3613 0.80 -4.1
4,254,605 + Sama_3613 0.80 -1.8
4,254,605 + Sama_3613 0.80 -1.0
4,254,664 + Sama_3613 0.82 -3.5
4,254,664 + Sama_3613 0.82 -2.4
4,254,664 + Sama_3613 0.82 -2.7
4,254,664 + Sama_3613 0.82 -1.4
4,254,664 + Sama_3613 0.82 -5.4
4,254,664 + Sama_3613 0.82 -2.8
4,254,664 + Sama_3613 0.82 -2.6
4,254,665 - Sama_3613 0.82 -2.3
4,254,665 - Sama_3613 0.82 +0.2
4,254,665 - Sama_3613 0.82 +0.2
4,254,665 - Sama_3613 0.82 -0.4
4,254,665 - Sama_3613 0.82 -1.3
4,254,665 - Sama_3613 0.82 -1.0
4,254,665 - Sama_3613 0.82 -3.5
4,254,703 + Sama_3613 0.83 -1.2
4,254,703 + Sama_3613 0.83 -1.6
4,254,704 - Sama_3613 0.83 -3.2
4,254,704 - Sama_3613 0.83 +1.2
4,254,794 + Sama_3613 0.86 -2.5
4,254,817 + Sama_3613 0.87 -1.1
4,254,817 + Sama_3613 0.87 -2.9
4,254,818 - Sama_3613 0.87 -1.6
4,254,936 + -1.9
4,254,936 + -2.3
4,254,937 - -3.3
4,254,937 - -2.5
4,254,946 + -3.6
4,254,946 + -1.4
4,254,947 - -4.0
4,254,947 - -2.7
4,254,947 - -4.9
4,254,947 - -1.5
4,254,950 + +0.2
4,254,951 - -1.1
4,254,983 + -3.2
4,254,983 + -1.4
4,254,983 + -3.1
4,254,984 - -2.0
4,255,181 + -0.4
4,255,181 + -0.9
4,255,181 + -3.1
4,255,181 + -4.6
4,255,181 + -1.4
4,255,181 + -1.6
4,255,182 - -1.4
4,255,182 - -2.3
4,255,182 - -1.0
4,255,182 - -3.7
4,255,202 - -2.0
4,255,202 - -1.7
4,255,229 - Sama_3614 0.10 -2.3
4,255,231 + Sama_3614 0.11 -0.8
4,255,231 + Sama_3614 0.11 -3.3
4,255,231 + Sama_3614 0.11 -1.5
4,255,231 + Sama_3614 0.11 -2.6
4,255,232 - Sama_3614 0.12 -3.0
4,255,232 - Sama_3614 0.12 -0.7
4,255,232 - Sama_3614 0.12 -1.7
4,255,232 - Sama_3614 0.12 -0.8
4,255,241 + Sama_3614 0.16 -1.1
4,255,241 + Sama_3614 0.16 -2.5
4,255,242 - Sama_3614 0.17 -2.2
4,255,258 + Sama_3614 0.25 -3.6
4,255,305 - Sama_3614 0.49 -2.5
4,255,305 - Sama_3614 0.49 -0.8
4,255,494 + -1.5
4,255,494 + -1.1
4,255,495 - +1.7
4,255,495 - +0.2
4,255,495 - +0.7
4,255,495 - +0.9
4,255,553 + -0.4
4,255,554 - +0.7
4,255,554 - +0.5
4,255,554 - +0.0
4,255,635 + Sama_3615 0.21 +0.2
4,255,635 + Sama_3615 0.21 -3.5
4,255,636 - Sama_3615 0.21 -3.0
4,255,636 - Sama_3615 0.21 -1.4
4,255,707 + Sama_3615 0.32 -1.1
4,255,708 - Sama_3615 0.32 -1.6
4,255,708 - Sama_3615 0.32 -1.3
4,255,726 - Sama_3615 0.35 -2.5
4,255,744 + Sama_3615 0.38 -3.7
4,255,745 - Sama_3615 0.38 -2.0
4,255,880 - Sama_3615 0.58 -2.1
4,255,880 - Sama_3615 0.58 -2.3
4,255,894 - Sama_3615 0.60 -0.4
4,255,938 + Sama_3615 0.67 -2.1
4,255,938 + Sama_3615 0.67 -1.3
4,255,939 - Sama_3615 0.67 -1.1
4,255,939 - Sama_3615 0.67 -2.8
4,255,939 - Sama_3615 0.67 -2.5
4,255,939 - Sama_3615 0.67 -2.9
4,256,045 + Sama_3615 0.83 -3.2
4,256,103 + -1.2
4,256,103 + -3.7
4,256,103 + -3.0
4,256,103 + -3.3
4,256,103 + -3.2
4,256,103 + -1.3
4,256,103 + -0.2
4,256,103 + -2.0
4,256,103 + -0.8
4,256,103 + -2.0
4,256,103 + -0.9
4,256,103 + -1.6
4,256,103 + -0.8
4,256,103 + -4.3
4,256,103 + -3.9
4,256,103 + -2.6
4,256,103 + -2.9
4,256,103 + -0.4
4,256,103 + -3.1
4,256,103 + -2.4
4,256,103 + -0.4
4,256,104 - -2.1
4,256,104 - -2.1
4,256,104 - -4.6
4,256,104 - -2.4
4,256,104 - -0.5
4,256,104 - -1.6
4,256,104 - -1.3
4,256,104 - -4.6
4,256,104 - +0.2
4,256,104 - -2.5
4,256,104 - -0.9
4,256,104 - -0.5
4,256,104 - -2.7
4,256,104 - -1.0
4,256,104 - -1.8
4,256,104 - -1.9
4,256,104 - -1.5
4,256,104 - -3.6
4,256,105 + -2.1
4,256,105 + -3.0
4,256,105 + -3.6
4,256,105 + -2.4
4,256,105 + -1.6
4,256,105 + -1.4
4,256,105 + -2.4
4,256,105 + -3.3
4,256,105 + -0.6
4,256,105 + -3.3
4,256,105 + -2.6
4,256,105 + -3.0
4,256,105 + -2.1
4,256,105 + -2.0
4,256,105 + -3.3
4,256,105 + -1.1
4,256,105 + -3.1
4,256,105 + -2.1
4,256,105 + -2.3
4,256,105 + -0.4
4,256,105 + -0.8
4,256,105 + -3.2
4,256,105 + -2.9
4,256,105 + -2.9
4,256,105 + -0.8
4,256,105 + -4.1
4,256,105 + +1.2
4,256,106 - -3.1
4,256,106 - -2.1
4,256,106 - -0.7
4,256,106 - -3.3
4,256,106 - -2.8
4,256,106 - -1.3
4,256,106 - -2.1
4,256,106 - -0.6
4,256,106 - -0.2
4,256,106 - -2.6
4,256,106 - -2.7
4,256,106 - -1.4
4,256,106 - -2.7
4,256,106 - -0.7
4,256,106 - -0.7
4,256,106 - -2.4
4,256,106 - -2.7
4,256,106 - -2.4
4,256,106 - -2.0
4,256,106 - -3.3
4,256,106 - -3.5
4,256,106 - -1.6
4,256,106 - -2.1
4,256,106 - -2.4
4,256,106 - -4.4
4,256,106 - -2.1
4,256,106 - -4.2
4,256,106 - -3.0
4,256,106 - -2.3
4,256,106 - -2.7
4,256,106 - -0.4
4,256,106 - -0.8
4,256,106 - -2.3
4,256,106 - -2.1
4,256,106 - -3.6
4,256,135 + -1.8
4,256,135 + -1.8
4,256,135 + -2.0
4,256,135 + +1.2
4,256,135 + -3.3
4,256,146 + -3.1
4,256,146 + -2.0
4,256,146 + -3.1
4,256,147 - -2.7
4,256,147 - -2.3
4,256,158 + -1.8
4,256,158 + -2.9
4,256,159 - -0.5
4,256,170 + -3.1
4,256,170 + -1.8
4,256,171 - +1.2
4,256,171 - -0.1
4,256,171 - -0.2
4,256,289 - -4.6
4,256,370 + Sama_3616 0.12 -2.4

Or see this region's nucleotide sequence