Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3613 and Sama_3614 are separated by 30 nucleotides Sama_3614 and Sama_3615 are separated by 89 nucleotides Sama_3615 and Sama_3616 are separated by 10 nucleotides
Sama_3613: Sama_3613 - formate dehydrogenase, alpha subunit (RefSeq), at 4,252,329 to 4,255,178
_3613
Sama_3614: Sama_3614 - hypothetical protein (RefSeq), at 4,255,209 to 4,255,403
_3614
Sama_3615: Sama_3615 - TorA specific chaperone, putative (RefSeq), at 4,255,493 to 4,256,158
_3615
Sama_3616: Sama_3616 - iron-sulfur cluster-binding protein (RefSeq), at 4,256,169 to 4,257,911
_3616
Position (kb)
4255
4256 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4254.257 kb on + strand, within Sama_3613 at 4254.257 kb on + strand, within Sama_3613 at 4254.258 kb on - strand, within Sama_3613 at 4254.258 kb on - strand, within Sama_3613 at 4254.258 kb on - strand, within Sama_3613 at 4254.266 kb on + strand, within Sama_3613 at 4254.266 kb on + strand, within Sama_3613 at 4254.266 kb on + strand, within Sama_3613 at 4254.267 kb on - strand, within Sama_3613 at 4254.271 kb on + strand, within Sama_3613 at 4254.271 kb on + strand, within Sama_3613 at 4254.271 kb on + strand, within Sama_3613 at 4254.272 kb on - strand, within Sama_3613 at 4254.272 kb on - strand, within Sama_3613 at 4254.273 kb on + strand, within Sama_3613 at 4254.273 kb on + strand, within Sama_3613 at 4254.274 kb on - strand, within Sama_3613 at 4254.274 kb on - strand, within Sama_3613 at 4254.274 kb on - strand, within Sama_3613 at 4254.287 kb on + strand, within Sama_3613 at 4254.288 kb on - strand, within Sama_3613 at 4254.320 kb on + strand, within Sama_3613 at 4254.320 kb on + strand, within Sama_3613 at 4254.320 kb on + strand, within Sama_3613 at 4254.321 kb on - strand, within Sama_3613 at 4254.321 kb on - strand, within Sama_3613 at 4254.337 kb on + strand, within Sama_3613 at 4254.337 kb on + strand, within Sama_3613 at 4254.337 kb on + strand, within Sama_3613 at 4254.337 kb on + strand, within Sama_3613 at 4254.337 kb on + strand, within Sama_3613 at 4254.337 kb on + strand, within Sama_3613 at 4254.338 kb on - strand, within Sama_3613 at 4254.338 kb on - strand, within Sama_3613 at 4254.338 kb on - strand, within Sama_3613 at 4254.338 kb on - strand, within Sama_3613 at 4254.338 kb on - strand, within Sama_3613 at 4254.338 kb on - strand, within Sama_3613 at 4254.338 kb on - strand, within Sama_3613 at 4254.368 kb on + strand, within Sama_3613 at 4254.368 kb on + strand, within Sama_3613 at 4254.369 kb on - strand, within Sama_3613 at 4254.376 kb on + strand, within Sama_3613 at 4254.376 kb on + strand, within Sama_3613 at 4254.376 kb on + strand, within Sama_3613 at 4254.376 kb on + strand, within Sama_3613 at 4254.376 kb on + strand, within Sama_3613 at 4254.377 kb on - strand, within Sama_3613 at 4254.377 kb on - strand, within Sama_3613 at 4254.377 kb on - strand, within Sama_3613 at 4254.377 kb on - strand, within Sama_3613 at 4254.377 kb on - strand, within Sama_3613 at 4254.377 kb on - strand, within Sama_3613 at 4254.398 kb on + strand, within Sama_3613 at 4254.399 kb on - strand, within Sama_3613 at 4254.446 kb on + strand, within Sama_3613 at 4254.446 kb on + strand, within Sama_3613 at 4254.447 kb on - strand, within Sama_3613 at 4254.504 kb on - strand, within Sama_3613 at 4254.560 kb on - strand, within Sama_3613 at 4254.560 kb on - strand, within Sama_3613 at 4254.605 kb on + strand, within Sama_3613 at 4254.605 kb on + strand, within Sama_3613 at 4254.605 kb on + strand, within Sama_3613 at 4254.605 kb on + strand, within Sama_3613 at 4254.605 kb on + strand, within Sama_3613 at 4254.605 kb on + strand, within Sama_3613 at 4254.605 kb on + strand, within Sama_3613 at 4254.664 kb on + strand, within Sama_3613 at 4254.664 kb on + strand, within Sama_3613 at 4254.664 kb on + strand, within Sama_3613 at 4254.664 kb on + strand, within Sama_3613 at 4254.664 kb on + strand, within Sama_3613 at 4254.664 kb on + strand, within Sama_3613 at 4254.664 kb on + strand, within Sama_3613 at 4254.665 kb on - strand, within Sama_3613 at 4254.665 kb on - strand, within Sama_3613 at 4254.665 kb on - strand, within Sama_3613 at 4254.665 kb on - strand, within Sama_3613 at 4254.665 kb on - strand, within Sama_3613 at 4254.665 kb on - strand, within Sama_3613 at 4254.665 kb on - strand, within Sama_3613 at 4254.703 kb on + strand, within Sama_3613 at 4254.703 kb on + strand, within Sama_3613 at 4254.704 kb on - strand, within Sama_3613 at 4254.704 kb on - strand, within Sama_3613 at 4254.794 kb on + strand, within Sama_3613 at 4254.817 kb on + strand, within Sama_3613 at 4254.817 kb on + strand, within Sama_3613 at 4254.818 kb on - strand, within Sama_3613 at 4254.936 kb on + strand at 4254.936 kb on + strand at 4254.937 kb on - strand at 4254.937 kb on - strand at 4254.946 kb on + strand at 4254.946 kb on + strand at 4254.947 kb on - strand at 4254.947 kb on - strand at 4254.947 kb on - strand at 4254.947 kb on - strand at 4254.950 kb on + strand at 4254.951 kb on - strand at 4254.983 kb on + strand at 4254.983 kb on + strand at 4254.983 kb on + strand at 4254.984 kb on - strand at 4255.181 kb on + strand at 4255.181 kb on + strand at 4255.181 kb on + strand at 4255.181 kb on + strand at 4255.181 kb on + strand at 4255.181 kb on + strand at 4255.182 kb on - strand at 4255.182 kb on - strand at 4255.182 kb on - strand at 4255.182 kb on - strand at 4255.202 kb on - strand at 4255.202 kb on - strand at 4255.229 kb on - strand, within Sama_3614 at 4255.231 kb on + strand, within Sama_3614 at 4255.231 kb on + strand, within Sama_3614 at 4255.231 kb on + strand, within Sama_3614 at 4255.231 kb on + strand, within Sama_3614 at 4255.232 kb on - strand, within Sama_3614 at 4255.232 kb on - strand, within Sama_3614 at 4255.232 kb on - strand, within Sama_3614 at 4255.232 kb on - strand, within Sama_3614 at 4255.241 kb on + strand, within Sama_3614 at 4255.241 kb on + strand, within Sama_3614 at 4255.242 kb on - strand, within Sama_3614 at 4255.258 kb on + strand, within Sama_3614 at 4255.305 kb on - strand, within Sama_3614 at 4255.305 kb on - strand, within Sama_3614 at 4255.494 kb on + strand at 4255.494 kb on + strand at 4255.495 kb on - strand at 4255.495 kb on - strand at 4255.495 kb on - strand at 4255.495 kb on - strand at 4255.553 kb on + strand at 4255.554 kb on - strand at 4255.554 kb on - strand at 4255.554 kb on - strand at 4255.635 kb on + strand, within Sama_3615 at 4255.635 kb on + strand, within Sama_3615 at 4255.636 kb on - strand, within Sama_3615 at 4255.636 kb on - strand, within Sama_3615 at 4255.707 kb on + strand, within Sama_3615 at 4255.708 kb on - strand, within Sama_3615 at 4255.708 kb on - strand, within Sama_3615 at 4255.726 kb on - strand, within Sama_3615 at 4255.744 kb on + strand, within Sama_3615 at 4255.745 kb on - strand, within Sama_3615 at 4255.880 kb on - strand, within Sama_3615 at 4255.880 kb on - strand, within Sama_3615 at 4255.894 kb on - strand, within Sama_3615 at 4255.938 kb on + strand, within Sama_3615 at 4255.938 kb on + strand, within Sama_3615 at 4255.939 kb on - strand, within Sama_3615 at 4255.939 kb on - strand, within Sama_3615 at 4255.939 kb on - strand, within Sama_3615 at 4255.939 kb on - strand, within Sama_3615 at 4256.045 kb on + strand, within Sama_3615 at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.103 kb on + strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.104 kb on - strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.105 kb on + strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.106 kb on - strand at 4256.135 kb on + strand at 4256.135 kb on + strand at 4256.135 kb on + strand at 4256.135 kb on + strand at 4256.135 kb on + strand at 4256.146 kb on + strand at 4256.146 kb on + strand at 4256.146 kb on + strand at 4256.147 kb on - strand at 4256.147 kb on - strand at 4256.158 kb on + strand at 4256.158 kb on + strand at 4256.159 kb on - strand at 4256.170 kb on + strand at 4256.170 kb on + strand at 4256.171 kb on - strand at 4256.171 kb on - strand at 4256.171 kb on - strand at 4256.289 kb on - strand at 4256.370 kb on + strand, within Sama_3616
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 4,254,257 + Sama_3613 0.68 -1.4 4,254,257 + Sama_3613 0.68 -3.0 4,254,258 - Sama_3613 0.68 -2.7 4,254,258 - Sama_3613 0.68 -3.5 4,254,258 - Sama_3613 0.68 -0.4 4,254,266 + Sama_3613 0.68 -2.4 4,254,266 + Sama_3613 0.68 -1.9 4,254,266 + Sama_3613 0.68 -3.6 4,254,267 - Sama_3613 0.68 -0.4 4,254,271 + Sama_3613 0.68 -1.7 4,254,271 + Sama_3613 0.68 -2.7 4,254,271 + Sama_3613 0.68 -1.1 4,254,272 - Sama_3613 0.68 -2.0 4,254,272 - Sama_3613 0.68 -2.1 4,254,273 + Sama_3613 0.68 -1.5 4,254,273 + Sama_3613 0.68 -3.3 4,254,274 - Sama_3613 0.68 -2.8 4,254,274 - Sama_3613 0.68 -4.8 4,254,274 - Sama_3613 0.68 -3.0 4,254,287 + Sama_3613 0.69 -2.3 4,254,288 - Sama_3613 0.69 -2.6 4,254,320 + Sama_3613 0.70 -3.1 4,254,320 + Sama_3613 0.70 -1.0 4,254,320 + Sama_3613 0.70 -3.2 4,254,321 - Sama_3613 0.70 -2.0 4,254,321 - Sama_3613 0.70 -3.3 4,254,337 + Sama_3613 0.70 -3.0 4,254,337 + Sama_3613 0.70 -1.4 4,254,337 + Sama_3613 0.70 -2.7 4,254,337 + Sama_3613 0.70 -1.6 4,254,337 + Sama_3613 0.70 +0.2 4,254,337 + Sama_3613 0.70 -3.6 4,254,338 - Sama_3613 0.70 -2.2 4,254,338 - Sama_3613 0.70 -3.3 4,254,338 - Sama_3613 0.70 -1.1 4,254,338 - Sama_3613 0.70 -0.9 4,254,338 - Sama_3613 0.70 -2.7 4,254,338 - Sama_3613 0.70 -2.0 4,254,338 - Sama_3613 0.70 -5.4 4,254,368 + Sama_3613 0.72 -2.3 4,254,368 + Sama_3613 0.72 -3.7 4,254,369 - Sama_3613 0.72 -1.0 4,254,376 + Sama_3613 0.72 -2.3 4,254,376 + Sama_3613 0.72 -3.0 4,254,376 + Sama_3613 0.72 -2.2 4,254,376 + Sama_3613 0.72 -2.1 4,254,376 + Sama_3613 0.72 -2.5 4,254,377 - Sama_3613 0.72 -4.1 4,254,377 - Sama_3613 0.72 -0.2 4,254,377 - Sama_3613 0.72 -2.1 4,254,377 - Sama_3613 0.72 -2.7 4,254,377 - Sama_3613 0.72 -1.4 4,254,377 - Sama_3613 0.72 -3.1 4,254,398 + Sama_3613 0.73 -2.3 4,254,399 - Sama_3613 0.73 -2.6 4,254,446 + Sama_3613 0.74 -1.3 4,254,446 + Sama_3613 0.74 -2.7 4,254,447 - Sama_3613 0.74 -2.4 4,254,504 - Sama_3613 0.76 -4.3 4,254,560 - Sama_3613 0.78 -1.1 4,254,560 - Sama_3613 0.78 -2.3 4,254,605 + Sama_3613 0.80 -2.5 4,254,605 + Sama_3613 0.80 -2.5 4,254,605 + Sama_3613 0.80 -3.4 4,254,605 + Sama_3613 0.80 -3.3 4,254,605 + Sama_3613 0.80 -4.1 4,254,605 + Sama_3613 0.80 -1.8 4,254,605 + Sama_3613 0.80 -1.0 4,254,664 + Sama_3613 0.82 -3.5 4,254,664 + Sama_3613 0.82 -2.4 4,254,664 + Sama_3613 0.82 -2.7 4,254,664 + Sama_3613 0.82 -1.4 4,254,664 + Sama_3613 0.82 -5.4 4,254,664 + Sama_3613 0.82 -2.8 4,254,664 + Sama_3613 0.82 -2.6 4,254,665 - Sama_3613 0.82 -2.3 4,254,665 - Sama_3613 0.82 +0.2 4,254,665 - Sama_3613 0.82 +0.2 4,254,665 - Sama_3613 0.82 -0.4 4,254,665 - Sama_3613 0.82 -1.3 4,254,665 - Sama_3613 0.82 -1.0 4,254,665 - Sama_3613 0.82 -3.5 4,254,703 + Sama_3613 0.83 -1.2 4,254,703 + Sama_3613 0.83 -1.6 4,254,704 - Sama_3613 0.83 -3.2 4,254,704 - Sama_3613 0.83 +1.2 4,254,794 + Sama_3613 0.86 -2.5 4,254,817 + Sama_3613 0.87 -1.1 4,254,817 + Sama_3613 0.87 -2.9 4,254,818 - Sama_3613 0.87 -1.6 4,254,936 + -1.9 4,254,936 + -2.3 4,254,937 - -3.3 4,254,937 - -2.5 4,254,946 + -3.6 4,254,946 + -1.4 4,254,947 - -4.0 4,254,947 - -2.7 4,254,947 - -4.9 4,254,947 - -1.5 4,254,950 + +0.2 4,254,951 - -1.1 4,254,983 + -3.2 4,254,983 + -1.4 4,254,983 + -3.1 4,254,984 - -2.0 4,255,181 + -0.4 4,255,181 + -0.9 4,255,181 + -3.1 4,255,181 + -4.6 4,255,181 + -1.4 4,255,181 + -1.6 4,255,182 - -1.4 4,255,182 - -2.3 4,255,182 - -1.0 4,255,182 - -3.7 4,255,202 - -2.0 4,255,202 - -1.7 4,255,229 - Sama_3614 0.10 -2.3 4,255,231 + Sama_3614 0.11 -0.8 4,255,231 + Sama_3614 0.11 -3.3 4,255,231 + Sama_3614 0.11 -1.5 4,255,231 + Sama_3614 0.11 -2.6 4,255,232 - Sama_3614 0.12 -3.0 4,255,232 - Sama_3614 0.12 -0.7 4,255,232 - Sama_3614 0.12 -1.7 4,255,232 - Sama_3614 0.12 -0.8 4,255,241 + Sama_3614 0.16 -1.1 4,255,241 + Sama_3614 0.16 -2.5 4,255,242 - Sama_3614 0.17 -2.2 4,255,258 + Sama_3614 0.25 -3.6 4,255,305 - Sama_3614 0.49 -2.5 4,255,305 - Sama_3614 0.49 -0.8 4,255,494 + -1.5 4,255,494 + -1.1 4,255,495 - +1.7 4,255,495 - +0.2 4,255,495 - +0.7 4,255,495 - +0.9 4,255,553 + -0.4 4,255,554 - +0.7 4,255,554 - +0.5 4,255,554 - +0.0 4,255,635 + Sama_3615 0.21 +0.2 4,255,635 + Sama_3615 0.21 -3.5 4,255,636 - Sama_3615 0.21 -3.0 4,255,636 - Sama_3615 0.21 -1.4 4,255,707 + Sama_3615 0.32 -1.1 4,255,708 - Sama_3615 0.32 -1.6 4,255,708 - Sama_3615 0.32 -1.3 4,255,726 - Sama_3615 0.35 -2.5 4,255,744 + Sama_3615 0.38 -3.7 4,255,745 - Sama_3615 0.38 -2.0 4,255,880 - Sama_3615 0.58 -2.1 4,255,880 - Sama_3615 0.58 -2.3 4,255,894 - Sama_3615 0.60 -0.4 4,255,938 + Sama_3615 0.67 -2.1 4,255,938 + Sama_3615 0.67 -1.3 4,255,939 - Sama_3615 0.67 -1.1 4,255,939 - Sama_3615 0.67 -2.8 4,255,939 - Sama_3615 0.67 -2.5 4,255,939 - Sama_3615 0.67 -2.9 4,256,045 + Sama_3615 0.83 -3.2 4,256,103 + -1.2 4,256,103 + -3.7 4,256,103 + -3.0 4,256,103 + -3.3 4,256,103 + -3.2 4,256,103 + -1.3 4,256,103 + -0.2 4,256,103 + -2.0 4,256,103 + -0.8 4,256,103 + -2.0 4,256,103 + -0.9 4,256,103 + -1.6 4,256,103 + -0.8 4,256,103 + -4.3 4,256,103 + -3.9 4,256,103 + -2.6 4,256,103 + -2.9 4,256,103 + -0.4 4,256,103 + -3.1 4,256,103 + -2.4 4,256,103 + -0.4 4,256,104 - -2.1 4,256,104 - -2.1 4,256,104 - -4.6 4,256,104 - -2.4 4,256,104 - -0.5 4,256,104 - -1.6 4,256,104 - -1.3 4,256,104 - -4.6 4,256,104 - +0.2 4,256,104 - -2.5 4,256,104 - -0.9 4,256,104 - -0.5 4,256,104 - -2.7 4,256,104 - -1.0 4,256,104 - -1.8 4,256,104 - -1.9 4,256,104 - -1.5 4,256,104 - -3.6 4,256,105 + -2.1 4,256,105 + -3.0 4,256,105 + -3.6 4,256,105 + -2.4 4,256,105 + -1.6 4,256,105 + -1.4 4,256,105 + -2.4 4,256,105 + -3.3 4,256,105 + -0.6 4,256,105 + -3.3 4,256,105 + -2.6 4,256,105 + -3.0 4,256,105 + -2.1 4,256,105 + -2.0 4,256,105 + -3.3 4,256,105 + -1.1 4,256,105 + -3.1 4,256,105 + -2.1 4,256,105 + -2.3 4,256,105 + -0.4 4,256,105 + -0.8 4,256,105 + -3.2 4,256,105 + -2.9 4,256,105 + -2.9 4,256,105 + -0.8 4,256,105 + -4.1 4,256,105 + +1.2 4,256,106 - -3.1 4,256,106 - -2.1 4,256,106 - -0.7 4,256,106 - -3.3 4,256,106 - -2.8 4,256,106 - -1.3 4,256,106 - -2.1 4,256,106 - -0.6 4,256,106 - -0.2 4,256,106 - -2.6 4,256,106 - -2.7 4,256,106 - -1.4 4,256,106 - -2.7 4,256,106 - -0.7 4,256,106 - -0.7 4,256,106 - -2.4 4,256,106 - -2.7 4,256,106 - -2.4 4,256,106 - -2.0 4,256,106 - -3.3 4,256,106 - -3.5 4,256,106 - -1.6 4,256,106 - -2.1 4,256,106 - -2.4 4,256,106 - -4.4 4,256,106 - -2.1 4,256,106 - -4.2 4,256,106 - -3.0 4,256,106 - -2.3 4,256,106 - -2.7 4,256,106 - -0.4 4,256,106 - -0.8 4,256,106 - -2.3 4,256,106 - -2.1 4,256,106 - -3.6 4,256,135 + -1.8 4,256,135 + -1.8 4,256,135 + -2.0 4,256,135 + +1.2 4,256,135 + -3.3 4,256,146 + -3.1 4,256,146 + -2.0 4,256,146 + -3.1 4,256,147 - -2.7 4,256,147 - -2.3 4,256,158 + -1.8 4,256,158 + -2.9 4,256,159 - -0.5 4,256,170 + -3.1 4,256,170 + -1.8 4,256,171 - +1.2 4,256,171 - -0.1 4,256,171 - -0.2 4,256,289 - -4.6 4,256,370 + Sama_3616 0.12 -2.4
Or see this region's nucleotide sequence