Strain Fitness in Shewanella amazonensis SB2B around Sama_2348

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
2,815,175	-		Sama_2345	0.84	+0.5
2,815,247	-		Sama_2345	0.88	+0.7
2,815,267	+		Sama_2345	0.89	-2.7
2,815,377	+				+0.1
2,815,377	+				+0.7
2,815,377	+				+0.7
2,815,378	-				-0.5
2,815,378	-				-1.3
2,815,378	-				+0.0
2,815,555	+				+0.2
2,815,572	+				+0.5
2,815,572	+				-0.0
2,815,573	-				+0.4
2,815,593	-				-0.3
2,815,662	+				+0.7
2,815,663	-				+0.1
2,815,672	+				-0.9
2,815,672	+				-0.6
2,815,672	+				-0.3
2,815,672	+				-0.3
2,815,673	-		Sama_2346	0.10	+0.3
2,815,673	-		Sama_2346	0.10	-1.2
2,815,708	+		Sama_2346	0.23	+0.7
2,815,763	+		Sama_2346	0.42	-0.7
2,815,763	+		Sama_2346	0.42	-1.4
2,815,764	-		Sama_2346	0.43	-2.3
2,815,764	-		Sama_2346	0.43	+0.9
2,815,773	+		Sama_2346	0.46	+2.3
2,815,774	-		Sama_2346	0.46	-0.9
2,815,780	+		Sama_2346	0.48	+0.1
2,815,821	+		Sama_2346	0.63	+0.0
2,815,821	+		Sama_2346	0.63	+1.2
2,815,822	-		Sama_2346	0.63	-1.6
2,815,822	-		Sama_2346	0.63	-1.0
2,815,861	+		Sama_2346	0.77	+0.2
2,815,861	+		Sama_2346	0.77	+1.0
2,815,861	+		Sama_2346	0.77	-1.6
2,815,862	-		Sama_2346	0.78	+0.3
2,815,928	+				-0.8
2,815,957	+				+0.0
2,815,957	+				-1.5
2,815,957	+				+0.2
2,815,957	+				+0.2
2,815,957	+				+0.4
2,815,958	-				+0.9
2,815,958	-				-0.6
2,815,958	-				+0.3
2,815,958	-				+0.8
2,816,011	-				-0.4
2,816,086	+		Sama_2347	0.52	-0.9
2,816,111	+		Sama_2347	0.74	-1.9
2,816,111	+		Sama_2347	0.74	+1.7
2,816,133	+				-1.3
2,816,134	-				+1.7
2,816,140	+				+0.2
2,816,140	+				-0.9
2,816,140	+				-1.6
2,816,141	-				-0.9
2,816,141	-				-2.2
2,816,205	+				-0.3
2,816,205	+				-0.4
2,816,205	+				-0.9
2,816,205	+				-1.0
2,816,205	+				+0.7
2,816,205	+				-0.9
2,816,206	-				-0.9
2,816,206	-				-0.9
2,816,214	+				+0.7
2,816,214	+				+0.3
2,816,214	+				-0.9
2,816,215	-				-1.1
2,816,217	+				-0.9
2,816,218	-				-1.3
2,816,233	-				-0.0
2,816,233	-				-0.0
2,816,257	+				-0.9
2,816,509	-		Sama_2348	0.31	-0.3
2,816,509	-		Sama_2348	0.31	-1.3
2,816,517	+		Sama_2348	0.32	-0.3
2,816,517	+		Sama_2348	0.32	-0.9
2,816,540	+		Sama_2348	0.34	+0.7
2,816,541	-		Sama_2348	0.34	+2.0
2,816,570	-		Sama_2348	0.37	-0.5
2,816,570	-		Sama_2348	0.37	-2.1
2,816,607	+		Sama_2348	0.40	+0.7
2,816,607	+		Sama_2348	0.40	-0.9
2,816,608	-		Sama_2348	0.40	-0.5
2,816,608	-		Sama_2348	0.40	-1.9
2,816,655	-		Sama_2348	0.44	-0.9
2,816,823	+		Sama_2348	0.59	-1.3
2,816,824	-		Sama_2348	0.59	-0.9
2,816,876	-		Sama_2348	0.63	-0.9
2,816,944	+		Sama_2348	0.69	-0.6
2,816,944	+		Sama_2348	0.69	-0.2
2,817,033	+		Sama_2348	0.77	-1.3
2,817,033	+		Sama_2348	0.77	+1.1
2,817,033	+		Sama_2348	0.77	-1.4
2,817,034	-		Sama_2348	0.77	-0.7
2,817,034	-		Sama_2348	0.77	-1.3
2,817,034	-		Sama_2348	0.77	-2.5
2,817,034	-		Sama_2348	0.77	+0.1
2,817,034	-		Sama_2348	0.77	-0.3
2,817,034	-		Sama_2348	0.77	+1.3
2,817,057	+		Sama_2348	0.79	-0.3
2,817,058	-		Sama_2348	0.79	-1.9
2,817,058	-		Sama_2348	0.79	-0.9
2,817,100	+		Sama_2348	0.83	-1.6
2,817,101	-		Sama_2348	0.83	-1.6
2,817,101	-		Sama_2348	0.83	+0.2
2,817,101	-		Sama_2348	0.83	-1.1
2,817,101	-		Sama_2348	0.83	-1.9
2,817,179	-				-1.6
2,817,276	-				+0.0
2,817,282	+				-0.9
2,817,292	+				-0.3
2,817,292	+				+0.7
2,817,292	+				-2.7
2,817,293	-				-0.3
2,817,293	-				-1.9
2,817,293	-				+0.5
2,817,293	-				-0.6
2,817,293	-				-0.9
2,817,293	-				+0.7
2,817,293	-				-1.3
2,817,293	-				-0.9
2,817,310	-				+1.0
2,817,310	-				+0.0
2,817,310	-				-2.9
2,817,372	+				-2.9
2,817,373	-				-0.3
2,817,373	-				+0.1
2,817,373	-				-2.2
2,817,414	+				-2.3
2,817,415	-				+1.1
2,817,415	-				-0.6
2,817,428	-				+0.1
2,817,436	+				-0.3
2,817,478	+		Sama_2349	0.11	-1.5
2,817,478	+		Sama_2349	0.11	-0.5
2,817,522	+		Sama_2349	0.14	+0.7
2,817,523	-		Sama_2349	0.14	-2.1
2,817,523	-		Sama_2349	0.14	-2.3
2,817,550	+		Sama_2349	0.16	-0.0
2,817,577	-		Sama_2349	0.17	-0.6
2,817,780	+		Sama_2349	0.30	-0.5
2,817,813	-		Sama_2349	0.32	-2.3
2,817,813	-		Sama_2349	0.32	-1.3
2,817,885	+		Sama_2349	0.37	-0.6
2,817,886	-		Sama_2349	0.37	+2.3
2,817,896	-		Sama_2349	0.38	-1.3
2,817,907	+		Sama_2349	0.38	-0.3
2,817,908	-		Sama_2349	0.39	+0.3
2,817,911	+		Sama_2349	0.39	+0.7
2,817,911	+		Sama_2349	0.39	-0.3
2,817,912	-		Sama_2349	0.39	-0.9
2,817,912	-		Sama_2349	0.39	-1.3
2,817,912	-		Sama_2349	0.39	-0.6
2,817,912	-		Sama_2349	0.39	-0.3
2,817,912	-		Sama_2349	0.39	-2.1
2,817,948	-		Sama_2349	0.41	-0.3
2,817,948	-		Sama_2349	0.41	-1.2
2,817,979	+		Sama_2349	0.43	-1.3
2,817,980	-		Sama_2349	0.43	+1.3
2,817,980	-		Sama_2349	0.43	+1.7
2,817,991	-		Sama_2349	0.44	+0.3
2,817,991	-		Sama_2349	0.44	-0.7
2,818,116	-		Sama_2349	0.52	+0.3
2,818,129	+		Sama_2349	0.53	+0.1
2,818,129	+		Sama_2349	0.53	-1.3
2,818,129	+		Sama_2349	0.53	-1.3
2,818,129	+		Sama_2349	0.53	-1.6
2,818,129	+		Sama_2349	0.53	-1.3
2,818,130	-		Sama_2349	0.53	-1.6
2,818,130	-		Sama_2349	0.53	-1.3
2,818,130	-		Sama_2349	0.53	-0.9
2,818,130	-		Sama_2349	0.53	+0.7
2,818,130	-		Sama_2349	0.53	+0.7
2,818,130	-		Sama_2349	0.53	-0.9
2,818,130	-		Sama_2349	0.53	-2.3
2,818,132	-		Sama_2349	0.53	-0.3
2,818,132	-		Sama_2349	0.53	+0.7
2,818,168	+		Sama_2349	0.55	-0.6
2,818,168	+		Sama_2349	0.55	-0.9
2,818,168	+		Sama_2349	0.55	-0.3
2,818,242	+		Sama_2349	0.60	-2.1
2,818,242	+		Sama_2349	0.60	-2.1
2,818,243	-		Sama_2349	0.60	-2.1
2,818,243	-		Sama_2349	0.60	-1.3
2,818,243	-		Sama_2349	0.60	-0.3
2,818,243	-		Sama_2349	0.60	+0.1
2,818,245	+		Sama_2349	0.60	+0.7
2,818,246	-		Sama_2349	0.60	+0.7
2,818,246	-		Sama_2349	0.60	-0.3
2,818,285	-		Sama_2349	0.63	+0.1