Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1978 and Sama_1979 are separated by 161 nucleotides Sama_1979 and Sama_1980 are separated by 158 nucleotides Sama_1980 and Sama_1981 are separated by 11 nucleotides Sama_1981 and Sama_1982 are separated by 57 nucleotides
Sama_1978: Sama_1978 - 3-oxoacyl-(acyl-carrier-protein) synthase II (RefSeq), at 2,406,797 to 2,408,035
_1978
Sama_1979: Sama_1979 - acyl carrier protein (RefSeq), at 2,408,197 to 2,408,430
_1979
Sama_1980: Sama_1980 - 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq), at 2,408,589 to 2,409,335
_1980
Sama_1981: Sama_1981 - malonyl CoA-acyl carrier protein transacylase (RefSeq), at 2,409,347 to 2,410,273
_1981
Sama_1982: Sama_1982 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,410,331 to 2,411,290
_1982
Position (kb)
2408
2409
2410 Strain fitness (log2 ratio)
-1
0
1 at 2407.703 kb on - strand, within Sama_1978 at 2407.807 kb on - strand, within Sama_1978 at 2407.852 kb on - strand, within Sama_1978 at 2408.058 kb on - strand at 2408.058 kb on - strand at 2408.068 kb on - strand at 2408.524 kb on - strand at 2408.543 kb on - strand at 2408.552 kb on + strand at 2408.552 kb on + strand at 2408.553 kb on - strand at 2409.349 kb on - strand at 2409.375 kb on - strand at 2409.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 2,407,703 - Sama_1978 0.73 -0.3 2,407,807 - Sama_1978 0.82 -0.3 2,407,852 - Sama_1978 0.85 -0.3 2,408,058 - +0.3 2,408,058 - -0.3 2,408,068 - +0.7 2,408,524 - +0.5 2,408,543 - +0.5 2,408,552 + -0.9 2,408,552 + -0.3 2,408,553 - +0.4 2,409,349 - +1.0 2,409,375 - -0.9 2,409,375 - +0.7
Or see this region's nucleotide sequence