Strain Fitness in Shewanella amazonensis SB2B around Sama_1166

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
1,420,170	+		Sama_1164	0.33	+0.1
1,420,246	+		Sama_1164	0.43	-0.5
1,420,246	+		Sama_1164	0.43	+0.6
1,420,248	+		Sama_1164	0.44	+0.1
1,420,248	+		Sama_1164	0.44	-0.0
1,420,248	+		Sama_1164	0.44	+0.4
1,420,249	-		Sama_1164	0.44	-1.3
1,420,249	-		Sama_1164	0.44	+0.2
1,420,258	+		Sama_1164	0.45	-0.2
1,420,258	+		Sama_1164	0.45	-1.0
1,420,258	+		Sama_1164	0.45	-2.4
1,420,258	+		Sama_1164	0.45	-0.8
1,420,258	+		Sama_1164	0.45	+0.7
1,420,258	+		Sama_1164	0.45	+0.1
1,420,259	-		Sama_1164	0.45	-0.3
1,420,259	-		Sama_1164	0.45	-0.3
1,420,259	-		Sama_1164	0.45	-1.3
1,420,262	+		Sama_1164	0.46	-0.4
1,420,263	-		Sama_1164	0.46	-0.3
1,420,263	-		Sama_1164	0.46	+1.3
1,420,331	+		Sama_1164	0.55	+0.2
1,420,331	+		Sama_1164	0.55	+0.0
1,420,331	+		Sama_1164	0.55	-0.7
1,420,332	-		Sama_1164	0.55	+0.7
1,420,332	-		Sama_1164	0.55	+2.2
1,420,362	-		Sama_1164	0.59	+0.7
1,420,500	+		Sama_1164	0.78	-0.8
1,420,500	+		Sama_1164	0.78	-0.3
1,420,501	-		Sama_1164	0.78	-1.8
1,420,501	-		Sama_1164	0.78	+1.4
1,420,501	-		Sama_1164	0.78	-0.1
1,420,534	+		Sama_1164	0.82	+0.7
1,420,534	+		Sama_1164	0.82	+0.6
1,420,535	-		Sama_1164	0.83	-0.1
1,420,535	-		Sama_1164	0.83	+0.4
1,420,646	-				+0.4
1,420,646	-				+0.2
1,420,668	+				+0.2
1,420,668	+				+0.0
1,420,669	-				+1.3
1,420,669	-				+0.0
1,420,669	-				+0.2
1,420,769	+		Sama_1165	0.26	+0.2
1,420,950	+		Sama_1165	0.71	+0.7
1,420,951	-		Sama_1165	0.71	+0.4
1,420,951	-		Sama_1165	0.71	+0.3
1,420,951	-		Sama_1165	0.71	-1.6
1,420,979	-		Sama_1165	0.78	+0.7
1,420,979	-		Sama_1165	0.78	-0.6
1,420,992	+		Sama_1165	0.81	-0.3
1,420,993	-		Sama_1165	0.82	+1.9
1,421,002	+		Sama_1165	0.84	+0.2
1,421,002	+		Sama_1165	0.84	+1.7
1,421,015	+		Sama_1165	0.87	-0.4
1,421,016	-		Sama_1165	0.87	+0.7
1,421,140	-				+1.0
1,421,148	+				+1.2
1,421,177	+				-0.3
1,421,178	-				-1.6
1,421,198	+				-0.1
1,421,198	+				+0.5
1,421,198	+				-1.8
1,421,198	+				+0.3
1,421,199	-				-1.1
1,421,199	-				+0.3
1,421,199	-				+0.3
1,421,234	-				-0.3
1,421,250	-				-1.1
1,421,287	+		Sama_1166	0.13	+0.0
1,421,351	+		Sama_1166	0.18	+2.1
1,421,351	+		Sama_1166	0.18	+1.4
1,421,351	+		Sama_1166	0.18	-0.4
1,421,382	+		Sama_1166	0.20	+0.2
1,421,392	+		Sama_1166	0.21	+1.0
1,421,392	+		Sama_1166	0.21	-0.1
1,421,461	+		Sama_1166	0.27	-0.1
1,421,461	+		Sama_1166	0.27	-0.3
1,421,462	-		Sama_1166	0.27	-1.4
1,421,462	-		Sama_1166	0.27	+0.5
1,421,479	+		Sama_1166	0.28	+0.7
1,421,493	+		Sama_1166	0.29	+0.1
1,421,521	-		Sama_1166	0.31	+0.1
1,421,521	-		Sama_1166	0.31	+0.7
1,421,522	+		Sama_1166	0.31	+0.6
1,421,522	+		Sama_1166	0.31	+0.0
1,421,548	+		Sama_1166	0.33	-0.2
1,421,549	-		Sama_1166	0.34	-0.0
1,421,549	-		Sama_1166	0.34	+0.5
1,421,549	-		Sama_1166	0.34	-0.7
1,421,549	-		Sama_1166	0.34	+0.4
1,421,549	-		Sama_1166	0.34	+0.5
1,421,575	-		Sama_1166	0.36	-0.6
1,421,604	+		Sama_1166	0.38	+0.1
1,421,625	-		Sama_1166	0.40	-0.5
1,421,625	-		Sama_1166	0.40	+0.1
1,421,648	-		Sama_1166	0.41	+0.2
1,421,717	-		Sama_1166	0.47	+1.7
1,421,764	+		Sama_1166	0.51	+0.4
1,421,765	-		Sama_1166	0.51	-1.6
1,421,862	+		Sama_1166	0.58	+0.3
1,422,025	+		Sama_1166	0.71	-0.6
1,422,025	+		Sama_1166	0.71	-0.5
1,422,107	+		Sama_1166	0.78	+0.2
1,422,112	+		Sama_1166	0.78	+1.0
1,422,112	+		Sama_1166	0.78	+0.7
1,422,112	+		Sama_1166	0.78	-0.5
1,422,113	-		Sama_1166	0.78	+0.1
1,422,113	-		Sama_1166	0.78	+0.4
1,422,170	+		Sama_1166	0.83	+0.2
1,422,171	-		Sama_1166	0.83	+1.6
1,422,271	+				+0.2
1,422,271	+				-0.1
1,422,272	-				+0.4
1,422,272	-				-0.1
1,422,272	-				+2.0
1,422,272	-				+0.2
1,422,272	-				+2.7
1,422,289	+				-0.4
1,422,297	-				+1.2
1,422,297	-				+0.1
1,422,328	+				-0.3
1,422,328	+				-0.0
1,422,369	-				-1.3
1,422,386	+				-0.5
1,422,386	+				+1.1
1,422,386	+				-0.8
1,422,387	-				-0.8
1,422,387	-				+0.3
1,422,449	+				+0.4
1,422,449	+				-0.4
1,422,449	+				+0.6
1,422,449	+				+0.6
1,422,449	+				-0.6
1,422,450	-				+2.0
1,422,450	-				-0.3
1,422,450	-				-1.2
1,422,450	-				-0.5
1,422,450	-				-2.6
1,422,450	-				-1.0
1,422,450	-				-1.1
1,422,450	-				+0.2
1,422,469	+				+1.1
1,422,469	+				+1.2
1,422,600	-				-0.2
1,422,641	+				-0.3
1,422,642	-				+0.2
1,422,688	-				-1.8
1,422,777	+		Sama_1167	0.13	+0.5
1,422,777	+		Sama_1167	0.13	+0.7
1,422,777	+		Sama_1167	0.13	-2.8
1,422,778	-		Sama_1167	0.13	-0.8
1,422,778	-		Sama_1167	0.13	-0.3
1,422,778	-		Sama_1167	0.13	+1.2
1,422,778	-		Sama_1167	0.13	+0.3
1,422,785	+		Sama_1167	0.13	-1.3
1,422,785	+		Sama_1167	0.13	-0.2
1,422,786	-		Sama_1167	0.13	+0.7
1,422,786	-		Sama_1167	0.13	-0.8
1,422,786	-		Sama_1167	0.13	-1.6
1,422,786	-		Sama_1167	0.13	+0.2
1,422,895	+		Sama_1167	0.17	+0.7
1,422,895	+		Sama_1167	0.17	+1.2
1,422,896	-		Sama_1167	0.17	-0.6
1,422,896	-		Sama_1167	0.17	-0.0
1,422,905	+		Sama_1167	0.17	+0.6
1,422,906	-		Sama_1167	0.17	-0.7
1,422,918	+		Sama_1167	0.17	+1.1
1,422,918	+		Sama_1167	0.17	-0.8
1,422,918	+		Sama_1167	0.17	-0.4
1,422,919	-		Sama_1167	0.17	+2.3
1,422,919	-		Sama_1167	0.17	-1.0
1,422,919	-		Sama_1167	0.17	-1.3
1,422,920	+		Sama_1167	0.18	+0.7
1,422,921	-		Sama_1167	0.18	-1.1
1,422,986	+		Sama_1167	0.20	+0.7
1,422,986	+		Sama_1167	0.20	+1.7
1,422,987	-		Sama_1167	0.20	-0.3
1,422,987	-		Sama_1167	0.20	+0.0
1,423,029	-		Sama_1167	0.21	-0.8
1,423,029	-		Sama_1167	0.21	-0.3
1,423,073	+		Sama_1167	0.23	+0.0
1,423,073	+		Sama_1167	0.23	-0.7
1,423,073	+		Sama_1167	0.23	-0.0
1,423,073	+		Sama_1167	0.23	+1.4
1,423,073	+		Sama_1167	0.23	-0.8
1,423,073	+		Sama_1167	0.23	+0.7
1,423,073	+		Sama_1167	0.23	+0.7
1,423,073	+		Sama_1167	0.23	+1.0
1,423,074	-		Sama_1167	0.23	-2.4
1,423,074	-		Sama_1167	0.23	-0.7
1,423,074	-		Sama_1167	0.23	-0.7
1,423,074	-		Sama_1167	0.23	-0.1
1,423,074	-		Sama_1167	0.23	-0.8
1,423,074	-		Sama_1167	0.23	-0.5
1,423,083	+		Sama_1167	0.23	+0.1
1,423,084	-		Sama_1167	0.23	-0.8
1,423,208	+		Sama_1167	0.27	+0.5
1,423,277	-		Sama_1167	0.29	+1.7
1,423,277	-		Sama_1167	0.29	+0.3
1,423,277	-		Sama_1167	0.29	+0.2
1,423,277	-		Sama_1167	0.29	+0.2